MAPQ value change

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Cara

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Jun 22, 2021, 10:06:32 AM6/22/21
to 3D Genomics
Dear group,

I wonder if there is any way I can change the MAPQ value to generate different. hic file? Such like I can set the MAPQ value to 20 or 10 instead of 30 and 0.

Thanks,
Cara

Neva Durand

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Jun 22, 2021, 10:19:07 AM6/22/21
to Cara, 3D Genomics
Yes use the -q flag when calling Pre. 


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Neva Cherniavsky Durand, Ph.D. | she, her, hers
Assistant Professor |  Molecular and Human Genetics
Aiden Lab | Baylor College of Medicine
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