$DIR_SCRIPTS/juicer.sh -g mm10 -S merge -d $DIR_DATA -z $DIR_SCRIPTS/references/mm10/Mus_musculus_assembly10.fasta -y $DIR_SCRIPTS/restriction_sites/mm10_HindIII.txt -D $DIR_SCRIPTS -p $DIR_CHROM_SIZES
(-: Finished sorting all sorted files into a single merge.
Picked up _JAVA_OPTIONS: -Xmx16384m
Exception in thread "main" java.lang.UnsupportedClassVersionError: LibraryComplexity : Unsupported major.minor version 52.0
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:792)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:482)
Picked up _JAVA_OPTIONS: -Xmx16384m
Start preprocess
Writing header
Writing body
..............................................................................................................................................................................................................................................................
Writing footer
Finished preprocess
Calculating norms for zoom BP_2500000
Calculating norms for zoom BP_1000000
Calculating norms for zoom BP_500000
Calculating norms for zoom BP_250000
Calculating norms for zoom BP_100000
Calculating norms for zoom BP_50000
Calculating norms for zoom BP_25000
Calculating norms for zoom BP_10000
Calculating norms for zoom BP_5000
Calculating norms for zoom FRAG_500
Calculating norms for zoom FRAG_200
Calculating norms for zoom FRAG_100
Calculating norms for zoom FRAG_50
Calculating norms for zoom FRAG_20
Calculating norms for zoom FRAG_5
Calculating norms for zoom FRAG_2
Calculating norms for zoom FRAG_1
Writing expected
Writing norms
Finished writing norms
In the final folder I have both .hic files but I don't understand what is going wrong.
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Intra-fragment Reads: 2,282,198(32.19%)
Below MAPQ Threshold: 547,773(7.73%)
Hi-C Contacts: 4,259,277(60.08%)
Ligation Motif Present: 343 (0.00%)
3' Bias (Long Range): 90% - 10%
Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 539,164 (7.61%)
Intra-chromosomal: 3,720,113 (52.48%)
Short Range (<20Kb): 1,835,829 (25.90%)
Long Range (>20Kb): 1,884,277 (26.58%)
To view this discussion on the web visit https://groups.google.com/d/msgid/3d-genomics/07417cd9-48dc-4835-a73c-849b176dc991%40googlegroups.com.
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To view this discussion on the web visit https://groups.google.com/d/msgid/3d-genomics/f3de0435-ad4a-4260-af5a-906c07ff2962%40googlegroups.com.
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