Hi Dustin and anyone else who can help,
I was running juicer.sh from SLURM folder in the encode version.
I ran into an error because juicer.sh tries to run juicer_tools statistics but this command is unknown.
This is the exact error:
/opt/scripts/common/juicer_tools statistics restriction_sites/A673_HiFi_hifiasm_asm_bionano_hap1_Arima.txt outputdir/inter_30.txt outputdir/merged30.txt A673_HiFi_hifiasm_asm_bionano_hap1
WARN [2021-09-07T17:03:59,187] [Globals.java:138] [main] Development mode is enabled
Exception in thread "main" java.lang.RuntimeException: Unknown command: statistics
at juicebox.tools.HiCTools.main(HiCTools.java:96)
This is the version I'm running:
/opt/scripts/common/juicer_tools -V
WARN [2021-09-07T17:19:50,855] [Globals.java:138] [main] Development mode is enabled
Juicer Tools Version 1.22.01
I appreciate it if someone can help me figure out what I should do.
Thanks!