Juicer2

[Matthew Tegtmeyer]

Hello,

I'm trying to test Juicer2 on our UGER and am getting queue time errors. Can you help me navigate this?

Thanks!

Matt

-bash:login04:/broad/hptmp/mtegtmey/SCBB1475_H3K27ac_encode_hg38_test 1032 $ /broad/hptmp/mtegtmey/ENCODEscripts/juicer.sh -s none -g hg38  -D /broad/hptmp/mtegtmey/

(-: Looking for fastq files...fastq files exist

Prepending: UGER (already loaded)

Unable to run job: Job was rejected because job requests unknown queue "short".

Exiting.

(-: Aligning files matching /broad/hptmp/mtegtmey/SCBB1475_H3K27ac_encode_hg38_test/fastq/*_R*.fastq*

 in queue short to genome hg38 with no fragment delimited maps.

(-: Created /broad/hptmp/mtegtmey/SCBB1475_H3K27ac_encode_hg38_test/splits and /broad/hptmp/mtegtmey/SCBB1475_H3K27ac_encode_hg38_test/aligned.  Splitting files

Unable to run job: Job was rejected because job requests unknown queue "short".

Exiting.

Unable to run job: Job was rejected because job requests unknown queue "short".

Exiting.

[Neva Durand]

Set the queue via -q and -l. This will depend on your system - what the cluster calls the queues. 

--
You received this message because you are subscribed to the Google Groups "3D Genomics" group.
To unsubscribe from this group and stop receiving emails from it, send an email to 3d-genomics...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/3d-genomics/a197bbe3-62eb-484d-aca7-94d1b9ffcbefn%40googlegroups.com.

--

Neva Cherniavsky Durand, Ph.D. | she, her, hers

Senior Scientist |  Gene Regulation Observatory

Broad Institute of MIT and Harvard