How to converting from " Hic_R.fq.gz to Hic_R.fastq.gz"

[Dao Minh Hai 002775]

Hi !

I use Juicer. But when I run it, "Failed to find any files matching /scratch/ulg/bbasv/daomhai/Juicerdir/fastq/*_R*.fastq*"

I checked my fastq is " fq.gz", 

Please give me a method to converting from "*.fq.gz" to "*.fastq.gz".

Thanks in advance .

Sincerely

Hai

[Muhammad Shamim]

You can actually just rename the files (fq = fastq).

[Dao Minh Hai 002775]

Thanks Shamin.

I got it.

But now , I face with other issue. In my work, I used a draft of assembly and HIC fastq file.

(daomhai@nic5-login1 /scratch/ulg/bbasv/daomhai/Juicerdir $ /scratch/ulg/bbasv/daomhai/Juicerdir/scripts/juicer.sh -D Juicerdir -z /scratch/users/d/a/daomhai/Juicerdir/references/pilon1.fasta -p assembly

(-: Looking for fastq files...fastq files exist

sbatch: error: invalid partition specified: commons

sbatch: error: Batch job submission failed: Invalid partition name specified

(-: Aligning files matching /scratch/ulg/bbasv/daomhai/Juicerdir/fastq/*_R*.fastq*

 in queue commons to genome hg19 with no fragment delimited maps.

(-: Created /scratch/ulg/bbasv/daomhai/Juicerdir/splits and /scratch/ulg/bbasv/daomhai/Juicerdir/aligned.

(-: Starting job to launch other jobs once splitting is complete

sbatch: error: invalid partition specified: commons

sbatch: error: Batch job submission failed: Invalid partition name specified

sbatch: error: invalid partition specified: commons

sbatch: error: Batch job submission failed: Invalid partition name specified

sbatch: error: invalid partition specified: long)

Thanks in advance for your help.

Sincerely,

Hai

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