Job exited with exit code 1 after Splitting files

[Jenny]

Hi,

I am running juicer.sh on my fastq files, and got stuck after splitting files. 

Here is the output I got in command line after running juicer.sh

(-: Looking for fastq files...fastq files exist

(-: Aligning files matching /u/home/j/jennybea/Hi-C/Juicer/NeuN_LL/fastq/*_R*.fastq*

 in queue broad to genome hg19 with site file /u/home/j/jennybea/Hi-C/Juicer//restriction_sites/hg19_MboI.txt

(-: Created /u/home/j/jennybea/Hi-C/Juicer/NeuN_LL/splits and /u/home/j/jennybea/Hi-C/Juicer/NeuN_LL/aligned.  Splitting files

Your job 3224599 ("a1531264533split") has been submitted

Job 3224599 exited with exit code 1.

Your job 3224604 ("a1531264533split") has been submitted

Job 3224604 exited with exit code 1.

(-: Starting job to launch other jobs once splitting is complete...

Unable to run job: Asterisk ('*') not allowed in objectname.

Exiting.

Unable to run job: Asterisk ('*') not allowed in objectname.

Exiting.

Unable to run job: Asterisk ('*') not allowed in objectname.

Exiting.

Unable to run job: Asterisk ('*') not allowed in objectname.

Exiting.

Unable to run job: Asterisk ('*') not allowed in objectname.

Exiting.

(-: Finished adding all jobs... please wait while processing.

How may I get through?

Thank you.

[Jenny]

Additional information: My fastq.gz files are 1.3GB and 1.5GB. juicer.sh failed to split the files. 

Does anyone know how to proceed?

Thanks,

Jenny

[Muhammad Saad Shamim]

Hey Jenny,

Would you be able to check why the split job exited with error code 1?

This may be due to read/write permissions for instance.

Your job 3224599 ("a1531264533split") has been submitted

Job 3224599 exited with exit code 1.

Your job 3224604 ("a1531264533split") has been submitted

Job 3224604 exited with exit code 1.

- Muhammad Saad Shamim

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[Jenny]

Sorry that I forgot to cc the group here.

Muhammad suggested the following:

So it looks like coreutils might be missing (which is one of the required libraries for juicer): 

https://github.com/theaidenlab/Juicer/wiki/Installation#dependencies

You may be able to bypass it in this context by softlinking your fastqs manually within the splits folder.

(so they technically aren't split, but would appear in the split folder)