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Dear Marloes,Can you send me a a few lines of your dataset, so I can try it out?When you import the data, you need to select the database (system code) - did you maybe choose "Ensembl Mouse"? It's important that you only use "Ensembl" because that's the datasource name used in the mapping database.Best regards,Tina
On Thu, Jun 22, 2017 at 11:25 AM, Marloes Jonkhout <marloes....@gmail.com> wrote:
Hello,I have RNA-seq data from mice that I want to import in Pathvisio. The gene ID's in the file are given as ENS ID's. However, when importing, I constantly get the same Error: Could not look up this identifier in the identifier mapping database.Used Gene database: Mm_Derby_Ensembl_85.bridgeUsed pathway to import data in: Mm_TNF-alpha_NF-kB_Signaling_Pathway_WP246/-69201.gpmlI have the following data in my import file:Ensembl IDSystem Code (En)LogFCAdjusted P-valueGene_nameIn another (old) post, I found that emptying the Appdata folder for Pathvisio should work, but it unfortunately didn't work for me. I also tried Pathvisio with Java7 and 8, there is no difference for me.Does someone know the trick to make it work? Maybe I'm just doing something completely wrong
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Martina Summer-Kutmon, PhD
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skype: mkutmon
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Martina Summer-Kutmon, PhD
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Dear Anders,
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Martina Summer-Kutmon, PhD
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Dear Anders,
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Martina Summer-Kutmon, PhD
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