Re: [spctools-discuss] Mac OS X install - boost compatibility

[Natalie Tasman]

I haven't built the TPP on OS X recently, but the build system
contains its own copy of the boost libraries. Can you tell if the TPP
build is using the TPP version of boost or the system library?

(I'd try to debug but my machines are on 10.7 and 10.8)

-Natalie

On Mon, Oct 1, 2012 at 4:24 PM, philipp (Overall Lab / UBC Vancouver)
<lange....@gmail.com> wrote:
> Hi,
>
> I am having some trouble installing 4.6 or 4.6.1 on Mac OS X 10.6.6
> While compiling I get the following error:
>
>> ../extern/ProteoWizard/pwiz/pwiz/data/msdata/IO.cpp:2598: error:
>> conversion from ‘boost::filesystem::path’ to non-scalar type
>> ‘std::basic_string<char, std::char_traits<char>, std::allocator<char> >’
>> requested
>
>
> If I read that error massage correctly it is having trouble while reading
> the path using boost.filename and the reason seems to be that the function
> used is now deprecated. I tried to work around that issue by
> 1: using the boost compatibility mode that is supposed to add depricated
> functions back
> 2: hard linking an older boost version that should be working fine
>
> none of this helped. While changing the source code of IO.cpp helps,
> compilation will proceed only to throw the same error for another file.
>
> As I would like to avoid patching the entire code I would be interested if
> anybody else encountered the same problem and probably found a solution or
> has an idea what I might be doing wrong.
>
> Thanks,
> Philipp
>
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[philipp (Overall Lab / UBC Vancouver)]

Hi Natalie,

thanks for the reply. Managed to make it use it's own copy and now it's working fine.

- Philipp

[Bjorn]

Dear Philipp and Natalie,

I'm trying to help the Mac OS X community with the installation of the TPP with these guidelines: http://tools.proteomecenter.org/wiki/index.php?title=TPP:Installing_the_Trans-Proteomic_Pipeline_%28TPP%29_4.4.0_on_Mac_OS_X_10.6.4

Please feel free to update the page with problems you encountered and the solution you found.

Thanks!

Bjorn

[philipp (Overall Lab / UBC Vancouver)]

Dear Bjorn,

your guidelines (and the foundations laid by Ulrich) are an awesome contribution.
Thanks for that!

Philipp