RE: [spctools-discuss] Problems with TPP 4.5.2 installation on Ubuntu 12.04
David Trudgian
Daniel,
You are missing a Perl module. You need to install it with:
apt-get install libxml-parser-perl
DT
--
David Trudgian Ph.D.
Instructor, Biochemistry Dept and Proteomics Core
UT Southwestern Medical Center at Dallas
6001 Forest Park Rd, Dallas, TX 75390-8816
Room:ND6.214 Tel:(214)648-7025 Fax:(214)645-6298
From: spctools...@googlegroups.com [mailto:spctools...@googlegroups.com]
On Behalf Of Daniel FS
Sent: Friday, July 20, 2012 12:50 PM
To: spctools...@googlegroups.com
Subject: [spctools-discuss] Problems with TPP 4.5.2 installation on Ubuntu 12.04
Hi, I was following the tutorial to install TPP 4.5.2 on Ubuntu 10.04 described here
http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3 and when I tried to install the boost-build package, Ubuntu returns a message saying that boost-build was an older version and Ubuntu already have a replacing package.
Until this time everything was fine, but when I tried to build TPP using "make && make install" command, Ubuntu returns me the following message error:
"
root@PowerEdge:/usr/local/src/TPP-4.5.2/src# make && make install
mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686
make -C ../extern/xtandem/src TANDEM_PARAMETERS_INSTALL_DIR="/usr/local/tpp/bin/" SRC_ROOT="/usr/local/src/TPP-4.5.2/src/" ARCH=Ubuntu-i686 BUILD_DIR=/usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686 EXPAT_LIB=/usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/libexpat.a
ZLIB_INCL="" ZLIB_LIB="-lz " USER_OBJS="/usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/TPPVersionInfo.o"
make[1]: Entering the directory `/usr/local/src/TPP-4.5.2/extern/xtandem/src'
make[1]: Out
of the directory `/usr/local/src/TPP-4.5.2/extern/xtandem/src'
mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/help
mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/schema
mkdir -p /usr/local/src/TPP-4.5.2/src/../build/Ubuntu-i686/images
cd perl_paths; export PERL=perl; make -f perl_paths.makefile all
make[1]: Entering the directory `/usr/local/src/TPP-4.5.2/src/perl_paths'
perl -pe "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/tpp\//g;s/cygpath \-wp //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\\x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g
" < ../../CGI/show_nspbin.pl > ../../build/Ubuntu-i686/show_nspbin.pl
perl -c -I ../../build/Ubuntu-i686 ../../build/Ubuntu-i686/show_nspbin.pl
Can't locate XML/Parser.pm in @INC (@INC contains: ../../build/Ubuntu-i686 /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at ../../build/Ubuntu-i686/show_nspbin.pl
line 33.
BEGIN failed--compilation aborted at ../../build/Ubuntu-i686/show_nspbin.pl line 33.
make[1]: ** [../../build/Ubuntu-i686/show_nspbin.pl] Error 2
make[1]: ** Deleting file `../../build/Ubuntu-i686/show_nspbin.pl'
make[1]: Out
of the directory `/usr/local/src/TPP-4.5.2/src/perl_paths'
make: ** [perl_paths] Error 2
"
Apparently the program couldn't find the XML/Parser.pm in somewhere away from my pc ("Can't locate XML/Parser.pm in @INC").
So I wish to know if someone else had this problem, if have some kind of relation with boost-build package and (of course) if someone could resolve that.
Thanks in advance and sorry for some eventual misspelling,
Daniel.
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