Sage 9.0.rc1 released

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Volker Braun

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Dec 29, 2019, 7:15:24 PM12/29/19
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As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 


a86de04f59 (tag: 9.0.rc1, trac/develop) Updated SageMath version to 9.0.rc1
7f941838a6 Trac #28878: psutil doesn't build on recent Cygwin
115dcc63aa Trac #28676: Pass --with-python=sage-python23 to Singular configure
7c990ccd0c Trac #28910: Update "Maintained" to 2020 for DockerHub README
746a826377 (tag: 9.0.rc0) Updated SageMath version to 9.0.rc0

Jaap Spies

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Dec 30, 2019, 5:50:16 AM12/30/19
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'make ptestlong'
----------------------------------------------------------------------
All tests passed!
----------------------------------------------------------------------
Total time for all tests: 2293.2 seconds
    cpu time: 14311.3 seconds
    cumulative wall time: 17775.3 seconds
[jaap@vrede sage-9.0.rc1]$ 

Operating System: Fedora 31
KDE Plasma Version: 5.17.4
KDE Frameworks Version: 5.64.0

Kernel Version: 5.3.16-300.fc31.x86_64
OS Type: 64-bit
Processors: 8 × Intel® Core™ i7-4770 CPU @ 3.40GHz
Memory: 15,6 GiB of RAM



Eric Gourgoulhon

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Dec 30, 2019, 11:53:06 AM12/30/19
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On Ubuntu 18.04 running on Core i7-6700HQ + 16 GB RAM:
- incremental build (-j8) from 9.0.rc0 OK
- all tests from ptestlong passed, except for a transient failure:
sage -t --long --warn-long 86.4 src/sage/modular/ssmod/ssmod.py  # 2 doctests failed
This is the same error as that already reported for Sage 9.0.beta10. It did not occur while ptesting Sage 9.0.rc0 on the same computer and shows up here again. Anyway, the error is transient: the test is passed when run standalone.

Eric.

Jaap Spies

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Dec 30, 2019, 5:08:57 PM12/30/19
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On my Raspberry Pi 4B:
Total time for all tests: 37560.2 seconds
    cpu time: 38702.7 seconds
    cumulative wall time: 48875.0 seconds
make: *** [Makefile:178: ptestlong] Error 21

sage -t --long --warn-long 253.8 src/sage/rings/tests.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/schemes/elliptic_curves/ell_rational_field.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/rings/function_field/function_field.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/schemes/cyclic_covers/cycliccover_finite_field.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/combinat/sf/macdonald.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/combinat/ncsf_qsym/ncsf.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/algebras/lie_algebras/classical_lie_algebra.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/function_field/function_field_valuation.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/number_field/number_field.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/geometry/cone.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/modular/btquotients/pautomorphicform.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/arith/misc.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/graphs/strongly_regular_db.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/structure/coerce_dict.pyx  # 1 doctest failed
sage -t --long --warn-long 253.8 src/sage/modular/modform_hecketriangle/abstract_space.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/modular/modform/find_generators.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/modular/modform/cuspidal_submodule.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/schemes/toric/chow_group.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/groups/matrix_gps/finitely_generated.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/function_field/ideal.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/misc/functional.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/number_field/totallyreal_rel.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/modular/hypergeometric_motive.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/categories/loop_crystals.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/algebras/iwahori_hecke_algebra.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/schemes/curves/projective_curve.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/modular/overconvergent/genus0.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/combinat/permutation.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/number_field/number_field_ideal.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/combinat/designs/orthogonal_arrays_find_recursive.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/geometry/triangulation/element.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/schemes/elliptic_curves/period_lattice.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/schemes/elliptic_curves/ell_field.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/modular/arithgroup/congroup_gammaH.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/number_field/galois_group.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/valuation/limit_valuation.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/combinat/e_one_star.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/combinat/designs/latin_squares.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/combinat/designs/evenly_distributed_sets.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/geometry/polyhedron/combinatorial_polyhedron/polyhedron_face_lattice.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/calculus/wester.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/groups/artin.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/symbolic/ring.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/structure/coerce.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/modular/modsym/tests.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/modular/modform/ambient_g1.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/tests/books/judson-abstract-algebra/fields-sage.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/polynomial/multi_polynomial_element.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/repl/preparse.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/tests/book_stein_modform.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/modular/modform/tests.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/homology/simplicial_complex_morphism.py  # Killed due to segmentation fault
sage -t --long --warn-long 253.8 src/sage/algebras/quaternion_algebra_element.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/structure/factorization.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/sets/set.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/quadratic_forms/quadratic_form__split_local_covering.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/misc/weak_dict.pyx  # 11 doctests failed
sage -t --long --warn-long 253.8 src/sage/modular/modform/eis_series.py  # Timed out
sage -t --long --warn-long 253.8 src/sage/schemes/curves/point.py  # Timed out
sage -t --long --warn-long 253.8 src/doc/en/thematic_tutorials/lie/affine.rst  # Timed out
sage -t --long --warn-long 253.8 src/sage/cpython/dict_del_by_value.pyx  # 1 doctest failed
sage -t --long --warn-long 253.8 src/sage/rings/real_interval_absolute.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/finite_rings/hom_finite_field_givaro.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/padics/local_generic_element.pyx  # Timed out
sage -t --long --warn-long 253.8 src/sage/rings/number_field/number_field_element.pyx  # Timed out
----------------------------------------------------------------------

But I think most failures are transient. See sage-devel. There is somthing rotten in the Raspberry Pi system!




darwin doppelganger

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Dec 30, 2019, 5:14:31 PM12/30/19
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MacBook Pro, Mojave 10.14.6, 'make' and 'make ptestlong' for Sage 9.0.rc1. No problems!
make
[sagelib-9.0.rc1] real 0m4.291s
[sagelib-9.0.rc1] user 0m2.986s
[sagelib-9.0.rc1] sys 0m1.135s
real 2m26.975s
user 2m2.529s
sys 0m23.517s
Sage build/upgrade complete!

make ptestlong
All tests passed!
----------------------------------------------------------------------
Total time for all tests: 3423.9 seconds
    cpu time: 17113.9 seconds
    cumulative wall time: 26454.1 seconds

Volker Braun

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Dec 30, 2019, 5:39:36 PM12/30/19
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Is that running with 4 threads and the 4GB model? 10h wall time is long but just about fast enough that we could set up a buildbot....

Jaap Spies

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Dec 30, 2019, 5:52:48 PM12/30/19
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4 threads but the 2GB model. I will have a 4GB model within a few days.
Testing with make ptestlong seems to be rather random. See my post on sage-devel.

Dima Pasechnik

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Dec 31, 2019, 1:48:03 AM12/31/19
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On Tue, Dec 31, 2019 at 6:39 AM Volker Braun <vbrau...@gmail.com> wrote:
>
> Is that running with 4 threads and the 4GB model? 10h wall time is long but just about fast enough that we could set up a buildbot....

if it just needs to be an ARM 64, there are more powerful SoC boards, e.g.
https://www.seeedstudio.com/HiKey-970-Development-Board.html
(not as cheap as Rasberry Pi though)
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Frédéric Chapoton

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Dec 31, 2019, 3:40:06 AM12/31/19
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I have problems when building R 3.6.2 on my (usually rather stable) Ubuntu patchbot.

The log complains about
In file included from ../../src/include/R_ext/Applic.h:41:0,
                 from integrate.c:33:
../../src/include/R_ext/BLAS.h:103:55: error: expected declaration specifiers or
 '...' before ')' token
   const double *beta, double *y, const int *incy FCLEN);
                                                       ^
../../src/include/R_ext/BLAS.h:110:35: error: expected declaration specifiers or '...' before ')' token
   double *y, const int *incy FCLEN);
             

                      
Frédéric
r362.log

Volker Braun

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Dec 31, 2019, 3:42:56 AM12/31/19
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I'm surprised that you managed to build the documentation with 2gb, must have been swapping quite a bit ;-)

Eric Gourgoulhon

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Dec 31, 2019, 4:41:31 AM12/31/19
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Le mardi 31 décembre 2019 09:40:06 UTC+1, Frédéric Chapoton a écrit :
I have problems when building R 3.6.2 on my (usually rather stable) Ubuntu patchbot.

Which version of Ubuntu? I could build R 3.6.2 without any trouble on Ubuntu 18.04, with the system BLAS (i.e. the Ubuntu package libblas-dev is installed on my system).

Best wishes,

Eric.

Frédéric Chapoton

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Dec 31, 2019, 5:13:33 AM12/31/19
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Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-70-generic x86_64)

This fails in the same way, even after I installed libblas-dev.

F

Dima Pasechnik

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Dec 31, 2019, 5:36:21 AM12/31/19
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you might have remains of unmerged tickets with spkg-configure for openblas etc. Check that you don't have links to *blas.pc files in local/lib/pkgconfig/

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Frédéric Chapoton

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Dec 31, 2019, 5:52:41 AM12/31/19
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I had three files there : blas.pc, cblas.pc and openblas.pc. Removing them, and then ./configure, and then make build : same problem, unchanged.

F


Le mardi 31 décembre 2019 11:36:21 UTC+1, Dima Pasechnik a écrit :
you might have remains of unmerged tickets with spkg-configure for openblas etc. Check that you don't have links to *blas.pc files in local/lib/pkgconfig/

On Tue, 31 Dec 2019, 18:13 Frédéric Chapoton, <fchap...@gmail.com> wrote:
Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-70-generic x86_64)

This fails in the same way, even after I installed libblas-dev.

F

Le mardi 31 décembre 2019 10:41:31 UTC+1, Eric Gourgoulhon a écrit :
Le mardi 31 décembre 2019 09:40:06 UTC+1, Frédéric Chapoton a écrit :
I have problems when building R 3.6.2 on my (usually rather stable) Ubuntu patchbot.

Which version of Ubuntu? I could build R 3.6.2 without any trouble on Ubuntu 18.04, with the system BLAS (i.e. the Ubuntu package libblas-dev is installed on my system).

Best wishes,

Eric.

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Dima Pasechnik

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Dec 31, 2019, 6:08:48 AM12/31/19
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have you built openblas successfully?

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Frédéric Chapoton

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Dec 31, 2019, 6:14:15 AM12/31/19
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I have launched "sage -f openblas", and this is re-building many things. Now building giac, so probably succedeed in building openblas.

F

Frédéric Chapoton

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Dec 31, 2019, 10:02:23 AM12/31/19
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After 'sage -f openblas", I am back at the previous situation : I have the three files blas.pc etc again in local/lib/pkgconfig. Building R still fails in the same way.

F

Clemens Heuberger

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Dec 31, 2019, 10:10:31 AM12/31/19
to sage-r...@googlegroups.com, Frédéric Chapoton
I probably had a similar problem on _one_ of my three Linux Mint patchbots.
I then installed all recommended dependencies listed on
http://doc.sagemath.org/html/en/installation/source.html#linux-recommended-installation
as well as libpango1.0-dev . Then, IIRC, it worked again.

The libpango1.0-dev thing also occurred on another patchbot around 8.9.rc0.




Am 31.12.19 um 09:40 schrieb Frédéric Chapoton:
> I have problems when building R 3.6.2 on my (usually rather stable) Ubuntu patchbot.
>
> The log complains about
> |
> Infile included from../../src/include/R_ext/Applic.h:41:0,
> fromintegrate.c:33:
> ../../src/include/R_ext/BLAS.h:103:55:error:expected declaration specifiers or
> '...'before ')'token
> constdouble*beta,double*y,constint*incy FCLEN);
> ^
> ../../src/include/R_ext/BLAS.h:110:35:error:expected declaration specifiers
> or'...'before ')'token
> double*y,constint*incy FCLEN);
> |
>
> Frédéric
>
>
> Le lundi 30 décembre 2019 01:15:24 UTC+1, Volker Braun a écrit :
>
> As always, you can get the latest beta version from the "develop" git
> branch. Alternatively, the self-contained source tarball is at
> http://www.sagemath.org/download-latest.html
> <http://www.sagemath.org/download-latest.html>
>
>
> a86de04f59 (tag: 9.0.rc1, trac/develop) Updated SageMath version to 9.0.rc1
> 7f941838a6 Trac #28878: psutil doesn't build on recent Cygwin
> 115dcc63aa Trac #28676: Pass --with-python=sage-python23 to Singular configure
> 7c990ccd0c Trac #28910: Update "Maintained" to 2020 for DockerHub README
> 746a826377 (tag: 9.0.rc0) Updated SageMath version to 9.0.rc0
>
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Dima Pasechnik

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Dec 31, 2019, 10:18:34 AM12/31/19
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It's probably
https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/index.html
- and you have a slightly broken "new" gfortran...

Sorry for barking up the wrong tree.

IMHO, we should just use
https://trac.sagemath.org/ticket/27870 and
https://trac.sagemath.org/ticket/28884
and do not try to solve already solved issues yet again.
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Frédéric Chapoton

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Dec 31, 2019, 10:23:22 AM12/31/19
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So what would be a practical solution in my case ?

Dima Pasechnik

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Dec 31, 2019, 10:32:31 AM12/31/19
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On Tue, Dec 31, 2019 at 11:23 PM Frédéric Chapoton <fchap...@gmail.com> wrote:
>
> So what would be a practical solution in my case ?
>

upgrade gfortran to a fixed version
(see https://gcc.gnu.org/bugzilla/show_bug.cgi?id=90329)

perharps your Ubuntu version has a fix...

or downgrade to gfortran6
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Dima Pasechnik

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Dec 31, 2019, 10:37:08 AM12/31/19
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On Tue, Dec 31, 2019 at 11:32 PM Dima Pasechnik <dim...@gmail.com> wrote:
>
> On Tue, Dec 31, 2019 at 11:23 PM Frédéric Chapoton <fchap...@gmail.com> wrote:
> >
> > So what would be a practical solution in my case ?
> >
>
on a developent box (thsi won't do for buildbots etc, naturally)
you can pull
https://trac.sagemath.org/ticket/28884

install libopenblas-dev and whatever R packages are needed from Ubuntu

run

make openblas-clean
./bootstrap && ./configure

and check that R won't be installed, and run

make

(and live happily ever after with R and openblas provided by the system)

Justin C. Walker

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Jan 1, 2020, 7:04:50 PM1/1/20
to 'Justin C. Walker' via sage-release


> On Dec 29, 2019, at 16:15 , Volker Braun <vbrau...@gmail.com> wrote:
>
> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

Built from a fresh clone of the develop tree, on two macOS systems: 10.13.6 (2017 iMac Pro, 18-core Xeon W) and 10.14.6 (2017 MBP, Quad-core Core i7). No problems with the build, and all tests (‘ptestlong’) passed on both systems!

Justin

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