Sage 8.7.beta0 released

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Volker Braun

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Jan 23, 2019, 3:47:49 PM1/23/19
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As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

5389d8dc87 (tag: 8.7.beta0, trac/develop) Updated SageMath version to 8.7.beta0
36ec29e57d Trac #26969: Misc pip upgrades
79cf5c980d Trac #27023: fix missing ::
a4dd7deefc Trac #27020: OpenBLAS 0.3.5
e60f32bb91 Trac #27017: Remove sage.schemes.elliptic_curves.padics from documentation
4fb44bc920 Trac #27014: Deprecate sage.misc.misc.uniq
c128368a45 Trac #27013: py3: some care for Hadamard matrices
6521233113 Trac #27010: py3: avoid .vertices() in methods _ford_fulkerson, edge_cut, bounded_outdegree_orientation and gomory_hu_tree
58d9680bbe Trac #27009: py3: avoid sorting vertices and edges in method treewidth
1ad58d2bb9 Trac #27008: py3: avoid .vertices() in method apex_vertices
010e1e893b Trac #27007: py3: avoid .vertices() in planarity.pyx
c14dc9c46f Trac #27005: wrong libgap conversion for matrices over QQ['x']
7123d7504d Trac #27003: _iterator_weight should not sort
48484ef69d Trac #27002: autodoc: use __qualname__ on Python 3
57c5c40661 Trac #26999: 1 optional gurobi doctest failing
ee7ed3c076 Trac #26998: py3 fix last 4 failing doctests in combinat/posets
23f806cad2 Trac #26997: 5 internet doctests failing in findstat.py
0698bfb999 Trac #26995: Upgrade to Pynac-0.7.23
619281186a Trac #23222: Add test to EllipticCurve.isogeny() to check for validity of kernel polynomials
4f560b02dc Trac #26988: py3: one tiny fix for isidentifier
90c3b31954 Trac #26985: some work on cluster mutation
ee2d9c5657 Trac #26981: fix trac ticket number in deprecation warning
24186b661f Trac #26967: py3: some work on modular/modform_hecketriangle/
2f73854033 Trac #26958: Inheriting from MPolynomialRing_libsingular crashes sage
319b7ac911 Trac #26943: Giac support for term orders and elimination
537b91840d Trac #26938: IncidenceStructure breaks if points cannot be sorted
37065d12db Trac #26936: WordMorphism: domain/codomain should be sortable if not given
cdab354eeb Trac #26933: Subsets_s should support unsortable sets
6a818ec5e1 Trac #26917: py3: some fix in set_partition
be09cc219f Trac #26864: Indentation error in Number Field
a915a3ab1a Trac #26839: RealLazyField: converting constants in an expression to float
cefb74fd8c Trac #26834: pep8 cleaning in vertex_separation.pyx
c6125397b3 Trac #26810: Permutations(avoiding=[[1,3,2]]) returns all permutations
52633235e2 Trac #26809: Wrong contains in Permutations avoiding a pattern
33ec2f8202 Trac #26516: Wrong sig_on_count in SharedMeatAxe
faab330692 Trac #26361: Glucose SAT solver
ce239b2e40 Trac #26183: doctest: tolerance parsing and ellipses
580c25bd1c Trac #26156: 0.0 is printed with too many digits
ddfe6f3a20 Trac #25931: changes to partition for k combinat
08166d10a2 Trac #25900: Package libffi
35931ca890 Trac #25865: fast iterator for set partitions with given block sizes
7aa39995c5 Trac #25480: Upgrade to cryptominisat 5.6.6 (and make it an optional package again)
41153919eb Trac #25384: Let `sage --jupyter` call the Jupyter in Sage
ec0b3f610b Trac #25147: Add DESTDIR support for boost_cropped
a3ee80c6cb Trac #25143: Add DESTDIR support for pari
137ad44b65 Trac #25100: Add DESTDIR support for gfan, lcalc, ratpoints, rubiks, symmetrica
d8f5ab4875 Trac #18214: Bug in volume computation of polyhedron
9b3ae6af92 Trac #27024: update sagetex to version 3.2
4a7f20f562 Trac #26966: py3: new doctest failures in homology
3d09a80bb4 Trac #26962: Logarithm of rational numbers is broken
d6f2242df4 Trac #26907: Exact division in ℤ[x][y] is broken
6abcb72592 (tag: 8.6, trac/master, sagemath/master) Updated SageMath version to 8.6

Jeroen Demeyer

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Jan 23, 2019, 3:57:13 PM1/23/19
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On 2019-01-23 21:47, Volker Braun wrote:
> 5389d8dc87 (tag: 8.7.beta0, trac/develop)

It's also tagged (presumably by mistake) as 8.7.rc0.

Jeroen Demeyer

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Jan 23, 2019, 3:58:07 PM1/23/19
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On 2019-01-23 21:47, Volker Braun wrote:
> 7aa39995c5 Trac #25480: Upgrade to cryptominisat 5.6.6 (and make it an
> optional package again)

There is something wrong with the tarball:

[cryptominisat-5.6.6] Found local metadata for cryptominisat-5.6.6
[cryptominisat-5.6.6] Attempting to download package
cryptominisat-5.6.6.tar.gz from mirrors
[cryptominisat-5.6.6]
http://www.mirrorservice.org/sites/www.sagemath.org/spkg/upstream/cryptominisat/cryptominisat-5.6.6.tar.gz
[cryptominisat-5.6.6]
[......................................................................]
[cryptominisat-5.6.6]
************************************************************************
[cryptominisat-5.6.6] Traceback (most recent call last):
[cryptominisat-5.6.6] File
"/home/jdemeyer/sage-patchbot/build/bin/../sage_bootstrap/download/cmdline.py",
line 118, in run_safe
[cryptominisat-5.6.6] run()
[cryptominisat-5.6.6] File
"/home/jdemeyer/sage-patchbot/build/bin/../sage_bootstrap/download/cmdline.py",
line 100, in run
[cryptominisat-5.6.6] app.download_tarball(args.url_or_tarball,
args.destination)
[cryptominisat-5.6.6] File
"/home/jdemeyer/sage-patchbot/build/bin/../sage_bootstrap/download/app.py",
line 43, in download_tarball
[cryptominisat-5.6.6] tarball.download()
[cryptominisat-5.6.6] File
"/home/jdemeyer/sage-patchbot/build/bin/../sage_bootstrap/tarball.py",
line 164, in download
[cryptominisat-5.6.6] raise ChecksumError('checksum does not match')
[cryptominisat-5.6.6] ChecksumError: checksum does not match
[cryptominisat-5.6.6]
************************************************************************
[cryptominisat-5.6.6]
************************************************************************
[cryptominisat-5.6.6] Error downloading cryptominisat-5.6.6.tar.gz
[cryptominisat-5.6.6]
************************************************************************

Volker Braun

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Jan 23, 2019, 5:27:00 PM1/23/19
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I accidentally typed in rc0 but then corrected it to beta0, any vestiges of 8.7.rc0 should just be local to your git repo (please delete / ignore)

Steven Trogdon

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Jan 24, 2019, 12:08:53 AM1/24/19
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Problem building libffi-3.2.1 on gentoo

cp: cannot overwrite non-directory '/64bitdev/storage/sage-git_develop/sage/local/./lib64' with directory '/64bitdev/storage/sage-git_develop/sage/local/var/tmp/sage/build/libffi-3.2.1/inst/64bitdev/storage/sage-git_develop/sage/local/./lib64'
************************************************************************
Error copying files for libffi-3.2.1.
************************************************************************

/64bitdev/storage/sage-git_develop/sage/local/./lib64

is a symlink

ls -al /64bitdev/storage/sage-git_develop/sage/local/./lib64
lrwxrwxrwx 1 strogdon math 3 Jan 13  2016 /64bitdev/storage/sage-git_develop/sage/local/./lib64 -> lib

Vincent Delecroix

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Jan 24, 2019, 2:10:26 AM1/24/19
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I do have a valid tarball on my computer

$ sha1sum cryptominisat-5.6.6.tar.gz
568cd2f528609a31d217e24e381de87e011499d4

And I confirm that the one downloaded from mirrorservice.org
is broken

$ sha1sum cryptominisat-5.6.6.tar.gz
0ff5ce55d8e3d199c81c5ebef5abf7f06a47796a

It is a completely broken archive

$ tar tzf cryptominisat-5.6.6.tar.gz

gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now

Could that be uploaded again?

Vincent

fchap...@gmail.com

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Jan 24, 2019, 3:40:52 AM1/24/19
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I have the same issue with libffi !

Sébastien Labbé

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Jan 24, 2019, 4:03:07 AM1/24/19
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I did not run any make test yet, but if I try to create a new notebook in Jupyter I get an error page saying "500 : Internal Server Error" and the error being printed in the terminal says

    ImportError: No module named defusedxml

It is copied below:




[I 09:59:24.941 NotebookApp] Creating new notebook in
[E 09:59:25.128 NotebookApp] Uncaught exception GET /notebooks/Untitled.ipynb?kernel_name=sagemath (::1)
    HTTPServerRequest(protocol='http', host='localhost:8888', method='GET', uri='/notebooks/Untitled.ipynb?kernel_name=sagemath', version='HTTP/1.1', remote_ip='::1', headers={'Accept-Language': 'fr,fr-FR;q=0.8,en-US;q=0.5,en;q=0.3', 'Accept-Encoding': 'gzip, deflate', 'Host': 'localhost:8888', 'Accept': 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8', 'User-Agent': 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:64.0) Gecko/20100101 Firefox/64.0', 'Connection': 'keep-alive', 'Referer': 'http://localhost:8888/tree', 'Cookie': '_xsrf=2|35264b7d|a0d922c8bff6cf037e2dcd2d14fe13e5|1548320335; username-localhost-8888="2|1:0|10:1548320335|23:username-localhost-8888|44:OTczOWYwNjcxN2ExNGNmYzkyMTcwMWZkMDFmMTQzOWY=|657f357dec5c09edba2d5d892cebb767c82a885731c711dc90c53cf71c685521"', 'Upgrade-Insecure-Requests': '1'})

    Traceback (most recent call last):
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/tornado/web.py", line 1509, in _execute
        result = method(*self.path_args, **self.path_kwargs)
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/tornado/web.py", line 2897, in wrapper
        return method(self, *args, **kwargs)
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/notebook/handlers.py", line 59, in get
        get_custom_frontend_exporters=get_custom_frontend_exporters
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/base/handlers.py", line 462, in render_template
        return template.render(**ns)
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/jinja2/environment.py", line 1008, in render
        return self.environment.handle_exception(exc_info, True)
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/jinja2/environment.py", line 780, in handle_exception
        reraise(exc_type, exc_value, tb)
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/templates/notebook.html", line 1, in top-level template code
        {% extends "page.html" %}
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/templates/page.html", line 154, in top-level template code
        {% block header %}
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/templates/notebook.html", line 120, in block "header"
        {% for exporter in get_custom_frontend_exporters() %}
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/notebook/notebook/handlers.py", line 19, in get_custom_frontend_exporters
        from nbconvert.exporters.base import get_export_names, get_exporter
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/__init__.py", line 4, in <module>
        from .exporters import *
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/exporters/__init__.py", line 3, in <module>
        from .exporter_locator import export_by_name
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/exporters/exporter_locator.py", line 12, in <module>
        from .templateexporter import TemplateExporter
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/exporters/templateexporter.py", line 23, in <module>
        from nbconvert import filters
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/filters/__init__.py", line 7, in <module>
        from .strings import *
      File "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/nbconvert/filters/strings.py", line 22, in <module>
        from defusedxml import cElementTree as ElementTree
    ImportError: No module named defusedxml
[E 09:59:25.144 NotebookApp] {
      "Accept-Language": "fr,fr-FR;q=0.8,en-US;q=0.5,en;q=0.3",
      "Accept-Encoding": "gzip, deflate",
      "Host": "localhost:8888",
      "Accept": "text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8",
      "User-Agent": "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:64.0) Gecko/20100101 Firefox/64.0",
      "Connection": "keep-alive",
      "Referer": "http://localhost:8888/tree",
      "Cookie": "_xsrf=2|35264b7d|a0d922c8bff6cf037e2dcd2d14fe13e5|1548320335; username-localhost-8888=\"2|1:0|10:1548320335|23:username-localhost-8888|44:OTczOWYwNjcxN2ExNGNmYzkyMTcwMWZkMDFmMTQzOWY=|657f357dec5c09edba2d5d892cebb767c82a885731c711dc90c53cf71c685521\"",
      "Upgrade-Insecure-Requests": "1"
    }
[E 09:59:25.144 NotebookApp] 500 GET /notebooks/Untitled.ipynb?kernel_name=sagemath (::1) 100.17ms referer=http://localhost:8888/tree

Sébastien Labbé

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Jan 24, 2019, 4:08:33 AM1/24/19
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On Thursday, January 24, 2019 at 10:03:07 AM UTC+1, Sébastien Labbé wrote:
I did not run any make test yet, but if I try to create a new notebook in Jupyter I get an error page saying "500 : Internal Server Error" and the error being printed in the terminal says

    ImportError: No module named defusedxml

Doing

sage -pip install defusedxml

was sufficient to solve the issue.

Jeroen Demeyer

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Jan 24, 2019, 4:19:09 AM1/24/19
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More precisely, the "tarball" is just this HTML fragment:

<html><body>You are being <a
href="https://codeload.github.com/msoos/cryptominisat/tar.gz/5.6.6">redirected</a>.</body></html>

I don't know how the release manager downloaded that tarball, as the
link on Trac #25480 is correctly responding with a 302 which any decent
downloader should automatically follow:

HTTP/1.1 302 Found
Date: Thu, 24 Jan 2019 09:14:59 GMT
Content-Type: text/html; charset=utf-8
Transfer-Encoding: chunked
Server: GitHub.com
Status: 302 Found
Vary: X-PJAX
Location: https://codeload.github.com/msoos/cryptominisat/tar.gz/5.6.6

Dima Pasechnik

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Jan 24, 2019, 4:44:52 AM1/24/19
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On Thu, Jan 24, 2019 at 9:19 AM Jeroen Demeyer <J.De...@ugent.be> wrote:
>
> More precisely, the "tarball" is just this HTML fragment:
>
> <html><body>You are being <a
> href="https://codeload.github.com/msoos/cryptominisat/tar.gz/5.6.6">redirected</a>.</body></html>
>
> I don't know how the release manager downloaded that tarball, as the
> link on Trac #25480 is correctly responding with a 302 which any decent
> downloader should automatically follow:

wget would do it right, but ends up creating a misnamed file 5.6.6.tag.gz

curl -O <URL> would download html fragment

curl -O -L <URL> would do the same as wget above does.

curl -L -o blah.foo <URL> would get the correct file and save it to blah.foo

I don't know how to make curl use the correct tarball name for saving.
(it also has options like --post302, I don't know whether they are any better)

Dima



>
> HTTP/1.1 302 Found
> Date: Thu, 24 Jan 2019 09:14:59 GMT
> Content-Type: text/html; charset=utf-8
> Transfer-Encoding: chunked
> Server: GitHub.com
> Status: 302 Found
> Vary: X-PJAX
> Location: https://codeload.github.com/msoos/cryptominisat/tar.gz/5.6.6
>
> --
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Jeroen Demeyer

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Jan 24, 2019, 6:10:42 AM1/24/19
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On 2019-01-24 10:44, Dima Pasechnik wrote:
> curl -O <URL> would download html fragment

Crazy stuff. What's the rationale for *not* following the Location
header by default?

Dima Pasechnik

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Jan 24, 2019, 6:18:36 AM1/24/19
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well, ask here:
https://github.com/curl/curl

they are very reasonable, I once had this:
https://github.com/curl/curl/issues/3143

Harald Schilly

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Jan 24, 2019, 6:21:07 AM1/24/19
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On Thu, Jan 24, 2019 at 8:10 AM Vincent Delecroix <20100.d...@gmail.com> wrote:
And I confirm that the one downloaded from mirrorservice.org
is broken

I've disabled that mirror. Ideally, whatever mechanism is downloading the files in Sage should blacklist such a mirror when there is an error. Then start again without that mirror.

 

Could that be uploaded again?

No, there is only the master server with the main (presumably correct) file. Mirrors pull from there.

-- harald

 

Dima Pasechnik

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Jan 24, 2019, 6:34:55 AM1/24/19
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It's really weird that mirrors don't checksum stuff they download and host.
Could it be due to an error in setting the mirroring on Sage's side?
Just wondering...

Jeroen Demeyer

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Jan 24, 2019, 6:44:05 AM1/24/19
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On 2019-01-24 12:20, Harald Schilly wrote:
>there is only the master server with the main (presumably correct)
> file.

It's NOT correct in this case (see the other posts in this thread). The
file genuinely has to be uploaded again to the master server.

And probably there is nothing wrong with that specific mirror, please
unblock it.

Harald Schilly

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Jan 24, 2019, 7:05:55 AM1/24/19
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Ok, I see, I've removed that file and pushed the timestamp of the master mirror. I don't know how to get the correct file, so that's all I can do…

Harald Schilly

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Jan 24, 2019, 7:13:52 AM1/24/19
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ok, it's the one being pointed at, makes sense. I've replaced the file. Master right now:

files@k8s:~/files/spkg$ sha1sum ./upstream/cryptominisat/cryptominisat-5.6.6.tar.gz 
568cd2f528609a31d217e24e381de87e011499d4  ./upstream/cryptominisat/cryptominisat-5.6.6.tar.gz

fchap...@gmail.com

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Jan 24, 2019, 7:29:51 AM1/24/19
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This libffi warning/failure does not prevent sage to run and work. It prevents my patchbot to work correctly though.

E. Madison Bray

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Jan 24, 2019, 7:45:37 AM1/24/19
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On Thu, Jan 24, 2019 at 9:40 AM <fchap...@gmail.com> wrote:
>
> I have the same issue with libffi !

I will look into that ASAP. It's a similar / related problem to
https://trac.sagemath.org/ticket/26996 but affecting libffi. The
install target for libffi might even depend on your compiler's
settings, which might explain why this didn't happen (at least that
I'm aware) on Debian-based distros where gcc does not install
libraries to ${prefix}/lib64.

Also, if you have your system's libffi-devel package installed and
it's recent enough, Sage's ./configure should detect it and skip
trying to install the libffi SPKG altogether.

Eric Gourgoulhon

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Jan 24, 2019, 8:12:23 AM1/24/19
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On Ubuntu 18.04 running on Xeon E5-2623 + 16 GB RAM:

- python2:
  - build (-j16) from a fresh git clone OK
  - all tests from ptestlong passed
 
- python3:
  - build (-j16) from a fresh git clone OK

I confirm that the Jupyter notebook is broken in this release, both with python2 and python3, as already reported by Sébastien (https://groups.google.com/d/msg/sage-release/ULwr6YtMfnY/UpPKqXmxDAAJ), the error message being

ImportError: No module named defusedxml
 
Eric.

PS: the checksum issues with the mirror www-ftp.lip6.fr seem to have been fixed, since it was the mirror used to make the above builds.

fchap...@gmail.com

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Jan 24, 2019, 8:18:22 AM1/24/19
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installing libffi-dev on the system and doing ./configure fixed the problem. Thanks !

Eric Gourgoulhon

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Jan 24, 2019, 9:33:44 AM1/24/19
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Le jeudi 24 janvier 2019 14:12:23 UTC+1, Eric Gourgoulhon a écrit :

I confirm that the Jupyter notebook is broken in this release, both with python2 and python3, as already reported by Sébastien (https://groups.google.com/d/msg/sage-release/ULwr6YtMfnY/UpPKqXmxDAAJ), the error message being

ImportError: No module named defusedxml
 

Andy Howell

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Jan 24, 2019, 10:36:41 AM1/24/19
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Under Ubuntu 18.10, I had one transient failure.

sage -t --long --warn-long 53.6
src/sage/numerical/linear_tensor_element.pyx  # Killed due to abort

sage/local/bin/python2 cored.

Running the test standalone passed, as did rerunning all tests again.


On 1/23/19 2:47 PM, Volker Braun wrote:
>

Justin C. Walker

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Jan 24, 2019, 2:06:58 PM1/24/19
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> On Jan 23, 2019, at 12:47 , Volker Braun <vbrau...@gmail.com> wrote:
>
> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

Built w/o problems from fresh clones of the develop tree, on three macOS platforms: 10.11.6 (mid-2014 MBP, Quad-core Core i7), 10.13.6 (2017 iMac Pro, Xeon W), and 10.14.2 (2017 MBP, Quad-core Core i7). For testing (‘ptestlong’):

10.11.6: all tests passed!

10.13.6: one doctest failed:
sage -t --long --warn-long 72.5 src/sage/libs/singular/polynomial.pyx
See below for the output.
This test passed when run stand-alone.

10.14.2: all tests passed!

Justin

================================================
**********************************************************************
File "src/sage/libs/singular/polynomial.pyx", line 184, in sage.libs.singular.polynomial.singular_polynomial_call
Failed example:
for i in range(30): # long time
n = leak(10000)
print("Leaked {} bytes".format(n))
if n == 0:
zeros += 1
if zeros >= 6:
break
else:
zeros = 0
Expected:
Leaked...
Leaked 0 bytes
Leaked 0 bytes
Leaked 0 bytes
Leaked 0 bytes
Leaked 0 bytes
Got:
Leaked 115129450496 bytes
Leaked 327155712 bytes
Leaked 272629760 bytes
Leaked 327155712 bytes
Leaked 327155712 bytes
Leaked 327155712 bytes
Leaked 327155712 bytes
Leaked 343932928 bytes
Leaked 335544320 bytes
Leaked 0 bytes
Leaked 71303168 bytes
Leaked 331350016 bytes
Leaked 331350016 bytes
Leaked 327155712 bytes
Leaked 0 bytes
Leaked 327155712 bytes
Leaked 0 bytes
Leaked 335544320 bytes
Leaked 0 bytes
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**********************************************************************
1 item had failures:
1 of 12 in sage.libs.singular.polynomial.singular_polynomial_call
[51 tests, 1 failure, 711.16 s]

================================================
--
Justin C. Walker, Curmudgeon-At-Large
Institute for the Absorption of Federal Funds
--------
Men are from Earth.
Women are from Earth.
Deal with it.
--------



Sébastien Labbé

unread,
Jan 24, 2019, 5:40:48 PM1/24/19
to sage-release
Running make ptestlong with optional/external doctests, I get:

Using --optional=bliss,cbc,ccache,cmake,cryptominisat,dot2tex,external,glucose,gmpy2,lrslib,memlimit,mpir,normaliz,notedown,pandoc_attributes,pycosat,pynormaliz,python2,rst2ipynb,sage
External software detected for doctesting: ffmpeg,graphviz,gurobi,imagemagick,internet,latex,pandoc

----------------------------------------------------------------------
sage -t --long src/sage/tests/cmdline.py  # 1 doctest failed
sage -t --long src/sage/combinat/designs/ext_rep.py  # 1 doctest failed
sage -t --long src/sage/repl/load.py  # 1 doctest failed
sage -t --long src/sage/misc/persist.pyx  # 2 doctests failed
sage -t --long src/sage/sat/boolean_polynomials.py  # 1 doctest failed
----------------------------------------------------------------------

New failures related to pandoc and cryptominisat are copied below. Otherwise, follow up at https://trac.sagemath.org/ticket/25536


sage -t --long src/sage/tests/cmdline.py
**********************************************************************
File "src/sage/tests/cmdline.py", line 820, in sage.tests.cmdline.test_executable
Failed example:
    print(open(output, 'r').read() == t)          # optional - pandoc
Expected:
    True
Got:
    False

**********************************************************************
1 item had failures:
   1 of 271 in sage.tests.cmdline.test_executable
    3 gdb tests not run
    4 kash tests not run
    0 tests not run because we ran out of time
    [270 tests, 1 failure, 52.18 s]



sage -t --long src/sage/sat/boolean_polynomials.py
**********************************************************************
File "src/sage/sat/boolean_polynomials.py", line 89, in sage.sat.boolean_polynomials.solve
Failed example:
    s = solve_sat(F, s_verbosity=1, c_max_vars_sparse=4, c_cutting_number=8) # optional - cryptominisat
Expected:
    c ...
    ...
Got:
    <BLANKLINE>

**********************************************************************
1 item had failures:
   1 of  41 in sage.sat.boolean_polynomials.solve
    0 tests not run because we ran out of time
    [46 tests, 1 failure, 93.25 s]

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