Sage 9.1.rc5 released

[Volker Braun]

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 

765c5cb3e2 (trac/develop, tag: 9.1.rc5) Updated SageMath version to 9.1.rc5

d15ac822ae Trac #29674: fedora-32:  If gcc 10 is found, install gcc spkg; fix building gcc (9.2.0) spkg with gcc 10

c5c78afdfd (tag: 9.1.rc4) Updated SageMath version to 9.1.rc4

[Emmanuel Charpentier]

On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not beaing resent (I have libgsl25).

Is there a way to avoid rebuilding from scratch (make distclean...) ?

[Matthias Köppe]

On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier wrote:

On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not beaing resent (I have libgsl25).

Is there a way to avoid rebuilding from scratch (make distclean...) ?

It should suffice to uninstall the sage packages that depend on gsl

$ grep gsl build/pkgs/*/dependencies

build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib

build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) | pkgconf

build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi ntl gsl pari 

[Emmanuel Charpentier]

Okay. How do you uninstall them ? The ./sage -advanced commmand doesn't suggest anything...

[Dima Pasechnik]

make cvxopt-clean 

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[Emmanuel Charpentier]

Thank you, Dima !

However, this isn't enough. Friom the relevant portion of install.log :

[dochtml] Traceback (most recent call last):

[dochtml]   File "/usr/lib/python3.7/runpy.py", line 183, in _run_module_as_main

[dochtml]     mod_name, mod_spec, code = _get_module_details(mod_name, _Error)

[dochtml]   File "/usr/lib/python3.7/runpy.py", line 142, in _get_module_details

[dochtml]     return _get_module_details(pkg_main_name, error)

[dochtml]   File "/usr/lib/python3.7/runpy.py", line 109, in _get_module_details

[dochtml]     __import__(pkg_name)

[dochtml]   File "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", line 59, in <module>

[dochtml]     import sage.all

[dochtml]   File "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line 119, in <module>

[dochtml]     from sage.misc.all       import *         # takes a while

[dochtml]   File "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", line 84, in <module>

[dochtml]     from .functional import (additive_order,

[dochtml]   File "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py", line 27, in <module>

[dochtml]     from sage.rings.complex_double import CDF

[dochtml] ImportError: libgsl.so.23: cannot open shared object file: No such file or directory

make[3]: *** [Makefile:2013: doc-html] Error 1

Is there somethoing specific to clean ?

Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit :

make cvxopt-clean 

On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier <emanuel.c...@gmail.com> wrote:

Okay. How do you uninstall them ? The ./sage -advanced commmand doesn't suggest anything...

Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit :

On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel Charpentier wrote:

On Debian testing, upgrading from  9.1.rc3 fails early on longsl23 not beaing resent (I have libgsl25).

Is there a way to avoid rebuilding from scratch (make distclean...) ?

It should suffice to uninstall the sage packages that depend on gsl

$ grep gsl build/pkgs/*/dependencies

build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl glpk suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib

build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl $(BLAS) | pkgconf

build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) mpfr mpfi ntl gsl pari 

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[Dima Pasechnik]

I also needed to rebuild the other deps of gsl, ie giac and
fflas_ffpack - which you had to uninstall just as you did for cvxopt

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[Emmanuel Charpentier]

This I was aware of and rebuilt them (successfully, it seems : I rebuilt fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc...

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[Dima Pasechnik]

On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier

I don't know - this seems to be the right library version.
What do get from

ls -l $SAGE_LOCAL/lib/*gsl*

?

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[Emmanuel Charpentier]

Nothing :

charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*

ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce type

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[Emmanuel Charpentier]

And, BTW, 

charpent@zen-book-flip:/usr/local/sage-9$ SAGE_LOCAL=local ls -l $SAGE_LOCAL/lib/*gsl*

ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce type

[Dima Pasechnik]

On Fri, May 15, 2020 at 10:34 AM Emmanuel Charpentier
<emanuel.c...@gmail.com> wrote:
>
> Nothing :
>
> charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*
> ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de ce type
>

it had to be run under sage -sh, to set $SAGE_LOCAL
meaningfully.

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[Emmanuel Charpentier]

Same difference :

charpent@zen-book-flip:/usr/local/sage-9$ sage -sh

Starting subshell with Sage environment variables set.  Don't forget

to exit when you are done.  Beware:

 * Do not do anything with other copies of Sage on your system.

 * Do not use this for installing Sage packages using "sage -i" or for

   running "make" at Sage's root directory.  These should be done

   outside the Sage shell.

Bypassing shell configuration files...

Note: SAGE_ROOT=/usr/local/sage-9

(sage-sh) charpent@zen-book-flip:sage-9$ ls -l $SAGE_LOCAL/lib/*gsl*

ls: impossible d'accéder à '/usr/local/sage-9/local/lib/*gsl*': Aucun fichier ou dossier de ce type

(sage-sh) charpent@zen-book-flip:sage-9$ exit

exit

Exited Sage subshell.

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[Emmanuel Charpentier]

Well, I'm still stuck.

A data point : inna dplicate of this tree, make distclean, make config, ./configure, make succeeds in buildig Sage 9.1.rc5. ptestlong underway.

HTH,

[Emmanuel Charpentier]

On Debian testing running on core i7 + 16 GB RAM:

• upgrading 9.1.rc3 to 9.1.rc5 via make ptestlong fails (see above) ;
• rebuilding afresh (make distclean ; make config ; ./configure ; make ptestlong) succeeds with one transient error (timeout) and 10 permanent errors :

File	Result	P/T
src/sage/tests/parigp.py	Timed out	T
src/sage/schemes/elliptic_curves/ell_number_field.py	3 doctests failed	P
src/sage/rings/number_field/number_field.py	7 doctests failed	P
src/sage/rings/number_field/number_field_element.pyx	1 doctest failed	P
src/sage/rings/number_field/number_field_ideal.py	2 doctests failed	P
src/sage/numerical/backends/glpk_backend.pyx	1 doctest failed	P
src/sage/lfunctions/dokchitser.py	2 doctests failed	P
src/sage/rings/polynomial/polynomial_quotient_ring.py	2 doctests failed	P
src/sage/lfunctions/pari.py	1 doctest failed	P
src/sage/rings/number_field/unit_group.py	1 doctest failed	P
src/sage/libs/glpk/error.pyx	1 doctest failed	P

The timeout wasn’t observed already ; all other errors were. The result of the retesting of initially failing tests is attached as chkerrs.txt.

HTH,

[Emmanuel Charpentier]

Forgotten attachment...

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[Matthias Köppe]

On Wednesday, May 13, 2020 at 3:41:44 PM UTC-7, Volker Braun wrote:

As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html 

765c5cb3e2 (trac/develop, tag: 9.1.rc5) Updated SageMath version to 9.1.rc5

d15ac822ae Trac #29674: fedora-32:  If gcc 10 is found, install gcc spkg; fix building gcc (9.2.0) spkg with gcc 10

The automatic tests at https://github.com/sagemath/sage/actions have completed. Some builds time out (> 6h), due to random variation of the build times. Minor doctest failures in various builds, similar to what has been noted for previous betas and rcs.

Linux (https://github.com/sagemath/sage/actions/runs/104055531):

– ubuntu-{trusty,xenial,bionic,eoan,focal} OK

– debian-{jessie,stretch,buster,bullseye,sid} OK (build failures for debian-sid-standard are from temporary Debian package installation problems)

– linuxmint-{17,18,19,19.3} OK

– fedora-{26,27,28,29,30,31,32} OK. In particular, fedora-32 now builds gcc and succeeds (some builds time out)

– centos-{7,8} OK

– archlinux-latest OK

– slackware-14.2 OK

Linux 32bit (with timeouts)

– ubuntu-eoan-i386 OK

– debian-buster-i386 OK

macOS (also at https://github.com/sagemath/sage/actions/runs/104055531):

– homebrew-macos OK (until runner was killed)

– homebrew-macos-python3_xcode OK

– homebrew-macos-python3_pythonorg OK

Linux/macOS + conda-forge (known limitation: only "standard" builds work; "minimal" and "standard-python2" builds do not work)

– docker-conda-forge OK 

– local-ubuntu-conda-forge OK

– local-macos-conda-forge OK

Windows (Cygwin64) (https://github.com/sagemath/sage/actions/runs/104055539):

– cygwin-standard build completed without errors (stage-iii)

Looks like this is ready for releasing.

[Justin C. Walker]

> On May 13, 2020, at 15:41 , Volker Braun <vbrau...@gmail.com> wrote:
>
> As always, you can get the latest beta version from the "develop" git branch. Alternatively, the self-contained source tarball is at http://www.sagemath.org/download-latest.html

As with 9.1-rc4, built from fresh clones of the develop branch, without problems, on three macOS systems: 10.13.6 (2017 iMac Pro, 18-core Xeon W); 10.14.6 (2017 MBP, Quad-core Core i7); and 10.15.4 (2019 MBP, 9-core Core i9).

All tests (‘ptestlong’) passed on all systems.

Justin

--
Justin C. Walker, Curmudgeon at Large
Institute for the Absorption of Federal Funds
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I'm beginning to like the cut of his jibberish.
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