The new repository and github org were created shortly after the Presto Software Foundation was set up (see the original announcement: https://prweb.com/releases/prweb16070792.htm). It's where most of the committers to Presto and a much of the community are doing active development now.
Migrating to the new version is fairly straightforward. If you have custom patches or connectors, you can find instructions on how to update your code here: https://github.com/prestosql/presto/wiki/Migration
We also have a new Slack in case you need additional help or have further questions. You can find a signup link under https://prestosql.io/community.html.
- Martin
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At Facebook our team is continuing to invest heavily in Presto both advancing our internal scenarios and collaborating cross company/org/individual. We continue to use the existing github org (https://github.com/prestodb/) and existing site (https://prestodb.io).
We, Facebook, are not joining the new foundation. We are committed to developing Presto as an open source project and are interested in working with who want to collaborate on the project.
I hope this helps answer your question.
-Vaughn Washington