The title of the thread should say "Spatial accuracy now..."
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That issue was up on Github for discussion for 15 days before the change was made
- I recommend you 'watch' the iNat repo if you want to
catch all the issues that are opened (see attached)
But I agree that using a data quality flag might not be the best way
to handle imprecise locations and you raise some good points - happy
to continue the conversation there
https://github.com/inaturalist/inaturalist/issues/1183
Since you've raised it here, everyone should be aware of the Github
ticket and I invite you or anyone else to comment on that ticket. I'd
be particularly interested in your feedback on the histogram.
This 5km cuttoff will convert 131,038 currently verifiable obs to casual. Here's the number of currently verifiable obs in various positional accuracy bins (5-10km, 10-15km, ... , >50km):
We'd be throwing out of verifiable ~35k fewer if we moved the cutoff from 5km to 10km. I'm a bit torn, I'd like to stick with 5km because thats the arbitrary (e.g. TIGER) coastal buffer cutoff where I'm getting the not-in-place issues. But I'd also like to keep as many that are useful in the verifiable bin
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Jakob: keep threshold but increase to 50km
As a compromise I propose we keep location accuracy as a component of the data quality assessment but increase the threshold to 50km as Jakob proposes. This 50km radius circle has an area about the size of the state of Rhode Island and it seems that (a) the number of observations with such large uncertainties is small enough and (b) the 'harm' they do in making the maps look really funky outweighs the 'good' they do in determining where species occur. Does this sound like a fair compromise?
However, I'd like to also propose that an acceptable use of the 'Does the location seem accurate?' = 'no' flag is to manually flag observations where the centroid doesn't make sense where the accuracy >0km but <50km range on a case by case basis. For example, if someone posts an observation of a salamander with a marker centered in the ocean but a 10km accuracy circle that does overlap the coast, I'd like to be able to manually flag the location as not seeming accurate.
This is because I'm working on a system to automatically detect observations that are out of range for further review. For example, if a salamander is endemic to California and Oregon but it is observed in Texas, this gets flagged for review. Currently observations with their centroids >5km from the coastline are getting flagged (e.g. its not in Oregon or California but rather the Pacific Ocean) and there's no easy way to incorporate location accuracy into this new system. So while I'm okay with not having these observations automatically flagged via the <5km filter. I'd like to be able to manually flag them on a case by case basis using the existing 'Does the location seem accurate?' flag so they stop triggering this automatic system. Does this sound fair?
I’m ok with the 50km buffer (without giving it too much thought) – it seems a reasonable compromise in terms of broad bio-geographic purposes. RG of course doesn’t affect the distribution maps viewed within iNat so all data is presented regardless of accuracy. I presume Charlie and others who are wanting to map at a finer scale in relation to environmental gradients can filter these coarser data accordingly.
My ongoing concern and wish, which doesn’t seem to have attracted any/much discussion, is to allow RG for planted/cultivated/domesticated organisms. I’ve given my reasons before – but what is needed/desirable is for such records (maybe same for species that are detected out of zone referred to in your post Scott) to be flagged distinctively. E.g. we have colour-coded pins for the various taxonomic groups, and empty flags for ‘location unknown’; can’t we have say an empty, colour-coded/edged pin for species that are planted/domesticated out of natural range. This happens a lot in NZ, and yet it is ecologically valid information to know that say kauri (Agathis australis) is planted and growing successfully in Stewart island (at bottom of country), and that it is coning or producing seedlings halfway down the country, but its natural distribution is confined to the top 1/3 of the North Island. This would be a hugely valuable rendering of information contained within records.
Cheers colin
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Thx afribats – am quite persuaded by your argument. GBIF users should be able to determine for themselves which data is relevant to their needs and filter accordingly.
500 km will seem very large for terrestrial records on an island, but not so much for a continent.
colin
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From: inatu...@googlegroups.com [mailto:inatu...@googlegroups.com]
On Behalf Of AfriBats
Sent: Tuesday, 29 November 2016 11:53 a.m.
To: iNaturalist
Subject: Re: [inaturalist] spatial accuracy new excluding some obs from becoming RG?
Hi Scott
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The bad precision observations seriously screw up the plant range maps
I want to be able to use the maps without downloading and processing the data.
Just because they aren't research grade doesn't mean afrobats or others who want them can't still download them. Same as observations with no date or no photo. We aren't deleting them. I don't see why a few peoples desire for things that are mapped wrong justifies making them research grade.
Does Charlie's concern relate to using the maps of 'Observations' generated within iNaturalist? If that's the case, it would seem that adding an ability to filter observations to any specified level of accuracy would address that issue.
Does Charlie's concern relate to using the maps of 'Observations' generated within iNaturalist? If that's the case, it would seem that adding an ability to filter observations to any specified level of accuracy would address that issue.
Excellent suggestion!
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I can live with either your last suggestion (RG based on other criteria only – i.e. having a photo or some independent means of checking identification; and having some geographical location) or 50 km. basically bigger/more inclusive ..
Thx colin
Colin meurk
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From: inatu...@googlegroups.com [mailto:inatu...@googlegroups.com]
On Behalf Of Scott Loarie
Sent: Tuesday, 29 November 2016 12:48 p.m.
To: inatu...@googlegroups.com
Subject: Re: [inaturalist] spatial accuracy new excluding some obs from becoming RG?
Hi folks, you can't currently filter observations based on spatial accuracy. Maybe thats something we can do down the road but lets move it to another thread. This discussion is about https://github.com/inaturalist/inaturalist/issues/1183
The proposed compromise is to up the threshold from 5km to 50km.
If you really absolutely can't live with that, then the alternative would be pulling spatial accuracy from the data quality assessment altogether.
I'd like to wrap this up by the end of the day.
Best,
Scott
On Mon, Nov 28, 2016 at 3:47 PM, AfriBats <jakob...@gmail.com> wrote:
Does Charlie's concern relate to using the maps of 'Observations' generated within iNaturalist? If that's the case, it would seem that adding an ability to filter observations to any specified level of accuracy would address that issue.
Excellent suggestion!
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Anyone who cannot determine where he or she is within 5 kilometers (or 500), feel free to come see me or one of my associates:
Hello all
I have to say I basically agree with Matt Goff. The scale and accuracy required depends on the question and the purpose. We should not second guess or presuppose how that data might be used – SO LONG AS precise data is not obscured or degraded in some way. If one is looking at a google map on iNat one is usually drawn to interrogating the outliers (which one can do easily for a broad visual evaluation of distribition); or one can generate one’s own maps from downloaded coordinates after first filtering out those that are beyond the precision tolerances (accuracy) of the particular purpose the researcher is interested in.
The important thing is ALL potential purposes are accommodated J. c
Colin meurk
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From: inatu...@googlegroups.com [mailto:inatu...@googlegroups.com]
On Behalf Of Matt Goff
Sent: Tuesday, 29 November 2016 4:49 p.m.
To: inaturalist
Subject: Re: [inaturalist] spatial accuracy new excluding some obs from becoming RG?
Charlie -
From:
inatu...@googlegroups.com [mailto:inatu...@googlegroups.com]
On Behalf Of AfriBats
Sent: Tuesday, 29 November 2016 11:53 a.m.
To: iNaturalist
Subject: Re: [inaturalist] spatial accuracy new excluding some obs from becoming RG?
Hi Scott
Jakob: keep threshold but increase to 50km
Nope, if setting a threshold, I would set it much larger: 500 km or more looks good to me, but only to throw out clearly erroneous observations, and not the baby with the bathtub.
What we're discussing here is estimated or measured accuracy. This bit, together with the XY-coordinates, is shared with GBIF, so every researcher should carefully evaluate which level of accuracy is required for a given question and taxonomic group.
If the new, automatic system mentioned below requires to automatically flag observations with low accuracy, it should be de-coupled from being eligible for RG and eventually getting shared with GBIF.
I bet that 99% of researchers interested in the kind of data iNat is generating will go through GBIF rather than assembling them through the various, original data providers, so maintaining a widely open door when transferring data to GBIF is of prime importance,
at least to me.
As a compromise I propose we keep location accuracy as a component of the data quality assessment but increase the threshold to 50km as Jakob proposes. This 50km radius circle has an area about the size of the state of Rhode Island and it seems that (a) the number of observations with such large uncertainties is small enough and (b) the 'harm' they do in making the maps look really funky outweighs the 'good' they do in determining where species occur. Does this sound like a fair compromise?
In previous posts of this thread I've tried to explain why I consider inaccurate observations in several cases as highly relevant and not to be discarded. Except for the extreme cases mentioned in the GitHub thread, I'd like to see some examples where inaccurate
observations mess up aggregated species maps. Take a wandering albatross. A humpback whale. A Triops shrimp. Knowing the Where and When within several hundred km can be highly informative in these cases. I'm not a botanist, but I'm sure there are also widely
dispersing plant species, and those occurring in vast and rather uniform habitats, where low accuracy is also not an issue in some applications.
However, I'd like to also propose that an acceptable use of the 'Does the location seem accurate?' = 'no' flag is to manually flag observations where the centroid doesn't make sense where the accuracy >0km but <50km range on a case by case basis. For example, if someone posts an observation of a salamander with a marker centered in the ocean but a 10km accuracy circle that does overlap the coast, I'd like to be able to manually flag the location as not seeming accurate.
Fully agreed, I'm also using the flag "not accurate", although I'd prefer a different wording. Your salamander case would suggest to me that the actual point is simply misplaced, and that's something very different from a correctly mapped location with a large
circle of accuracy. If the observer was unsure of the location, he/she would place it somewhere on land, and with a circle of accuracy encompassing the wider area that was visited (remembered).
This is because I'm working on a system to automatically detect observations that are out of range for further review. For example, if a salamander is endemic to California and Oregon but it is observed in Texas, this gets flagged for review. Currently observations with their centroids >5km from the coastline are getting flagged (e.g. its not in Oregon or California but rather the Pacific Ocean) and there's no easy way to incorporate location accuracy into this new system. So while I'm okay with not having these observations automatically flagged via the <5km filter. I'd like to be able to manually flag them on a case by case basis using the existing 'Does the location seem accurate?' flag so they stop triggering this automatic system. Does this sound fair?
Looking forward to see that system! Sounds pretty focussed on terrestrial biota, or are you doing the reverse, i.e. flagging marine species that are mapped far inland? What about species that are neither terrestrial nor marine? Without knowing what you're actually
planning, I would think that this approach requires quite a bit knowledge of the respective ecologies.
In any case, the manual flag certainly sounds fair and useful, but as I said above, I would word it differently - maybe "Location misplaced: y/n"? This would shift the view from the isolated aspect of accuracy to the combined information that we strive to evaluate:
XY-location plus circle of accuracy.
Cheers, Jakob
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The google map does have 'accuracy' associated with the places but unfortunately it is often way off
On Tue, Nov 29, 2016 at 8:08 AM, AfriBats <jakob...@gmail.com> wrote:
Hi Scott
2 suggestions related to the accuracy issue:
Could the flag "Does the location seem accurate?" reworded to something like "Does the location seem misplaced?". I think this captures better what has been discussed here.
Also, it would be great to address the issue of pseudo-accuracy when people search for places with large extents (e.g. protected areas), and then map the observation to wherever the Google place is set - missing accuracy information altogether. Does the Google map interface include anything which tells you the kind or size of the mapped entity? If so, this might be used to include accuracy information.
Thanks, JakobOk, I reverted https://github.com/inaturalist/inaturalist/issues/1183 withhttps://github.com/inaturalist/inaturalist/issues/1206 should be deployed tomorrowand made a ticket for adding positional accuracy to the APIhttps://github.com/inaturalist/inaturalist/issues/1207
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Charlie Hohn
Montpelier, Vermont
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If changing inat comes down to voting, I'd vote that the whole tone of this conversation changes so that maybe more of us would be willing to discuss such issues. Perhaps taking a break and coming back to it might be in order.
Thank you
Kent
On Tue, Nov 29, 2016 at 8:09 AM Charlie Hohn <naturalis...@gmail.com> wrote:
The google map does have 'accuracy' associated with the places but unfortunately it is often way off
On Tue, Nov 29, 2016 at 8:08 AM, AfriBats <jakob...@gmail.com> wrote:
Hi Scott
2 suggestions related to the accuracy issue:
Could the flag "Does the location seem accurate?" reworded to something like "Does the location seem misplaced?". I think this captures better what has been discussed here.
Also, it would be great to address the issue of pseudo-accuracy when people search for places with large extents (e.g. protected areas), and then map the observation to wherever the Google place is set - missing accuracy information altogether. Does the Google map interface include anything which tells you the kind or size of the mapped entity? If so, this might be used to include accuracy information.
Thanks, JakobOk, I reverted https://github.com/inaturalist/inaturalist/issues/1183 withhttps://github.com/inaturalist/inaturalist/issues/1206 should be deployed tomorrowand made a ticket for adding positional accuracy to the APIhttps://github.com/inaturalist/inaturalist/issues/1207
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Charlie Hohn
Montpelier, Vermont
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hi iNatters ... I (and colleagues at NatureWatchNZ) totally disagree with this desire to exclude observations from RG that don’t meet some arbitrary precision criterion. All records have to be taken at face value and there is error in all data. One cannot know whether someone (out of the 100 000 observers) has falsely ascribed accuracy where it doesn’t exist anyway. The required accuracy is a moving feast depending on the purpose. Just because your purpose is to map things at <5km accuracy doesn’t mean there aren’t other legitimate purposes. For example, if one wants to generate a precise location for monitoring, or map/list at a suburb, city, district, county, catchment, national park, state or even at country scale, the precision level required varies enormously. And historic records are valuable as part of data sets – at whatever scale is available.
The main reason for assigning RG is so it can be uploaded to GBIF – but the GBIF/TDWG standard (Darwin Core Archive) is capable of storing the meta-data so people can know at what scale the accuracy applies. Regardless of whether on iNat or GBIF, you can filter the data by whatever criteria you want (including accuracy or not stated). And I’m fine with encouraging people, by any incentive you wish, to improve the accuracy of their recording, but I don’t want someone else arbitrarily second-guessing what my needs are. Also I don’t want someone determining that planted/cultivated/domestic records are somehow devoid of ecological information – and therefore not worthy of being given RG status. We the users can make those decisions for ourselves. Thankyou. Colin
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My colleague sent me the following comment: "if you are talking about the necessary data checking/cleaning that should be done before any occurrence data is passed as ‘quality’ and used for a serious purpose then ... [one would have to go a lot further than is currently available in generalised iNat data and processing]". he sent me the following links (the middle 2 have abstracts that summarise the situation quite well).
http://www.gbif.org/resource/80528
http://www.sciencedirect.com/science/article/pii/S1574954116300577
Hi developers
It seems there's a new criterion under Data Quality Assessment, which says Position accurate to within 5km?.
Does that mean that all observations with positional accuracy of > 5 km are automatically excluded from becoming Research Grade? If that's indeed the case, I suggest to remove that criterion again, or set it to a cut-off value several orders of magnitude larger.
Posititional accuracy is one of the core data fields that is included in data made available through GBIF. The specific value above which an obervation is useless for a given research question depends on many factors, and cannot be set to a one-size-fits-all value such as 5 km. For instance, we just analyzed the spatio-temporal occurrence of migratory Lepidoptera across Europe, where a grid size of 100 km (and hence a positional accuracy much larger than 5 km) was deemed appropriate for our purposes.
Everyone using GBIF data should carefully evaluate and filter available data before using them in any further analyses, and positional accuracy is obviously one of the central fields in that respect. For that reason I don't see any problems sharing a RG observation with a large circle of accuracy as long as that value is correct. On the contrary, I'm much more concerned with observation that appear to be accurate, but in fact are not. For instance, I see may observations mapped to the Google midpoint of a protected area, e.g. that of Tarangire NP. Several users apparently search for that area, but don't move the map pin to the specific place where the observation was made within the park, or adjusting the circle of accuracy to encompass the entire park.
Jakob
As a supporter of both being able to discriminate precision and to see the big picture, I think I support Charlie’s approach of incorporating a feature/functionality in maps that give us the option. I also seem to have been a lone campaigner (but again knowing many agree J ) for distinguishing ‘wild or spontaneous occurrences of naturally occurring populations’/’ditto for artificially introduced species’/’planted, domesticated or cultivated occurrences’. yes, some observers may not know which category applies in many cases (the first would be the default) but that is the value of crowd-sourcing. There are experienced people out there who can, if they see something out of place can ‘change’ its status under the ‘Details’ options.
SO … I support Charlie’s call for having filters available on the distribution maps so one can switch to whatever locality precision one wants (we need to agree on the classes – but maybe some exponential series like 10, 100, 1000, 10 000 m would be good). I haven’t checked iNat to see if you use ft or m? that could create a slight complication as we use m in nz – and probably in Mexico and Canada versions?
AND … filters (or ideally permanent colour/shading differentiated pointers/flags for observations) on maps for my 3 (wild/non-local spontaneous/cultivated) status conditions.
Thx c
Colin meurk
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Incidentally Charlie, how do you handle endangered spp that are automatically obscured? This can be important for rare orchids, lizards or birds’ nests but is also often annoying.
I do support encouragement of precision!
Colin meurk
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