Hi Randy, you might want to have a look at this.
I flew RC4 a whole bunch today including lots of acro which was really great. But I also tried a few auto missions, and it failed every single time. The failure also occurred exactly the same way in almost exactly the same spot every time.
This was with RC4+ compiled from trunk (about a week old-ish?) on an APM2.5 with:
#define FRAME_CONFIG QUAD_FRAME
#define OPTFLOW DISABLED
#define MOUNT DISABLED
#define CLI_ENABLED ENABLED
#define AUTOTUNE ENABLED
#define COPTER_LEDS DISABLED
#define CONFIG_SONAR DISABLED
(I had to do that so it would fit).
I think I attempted 6 missions. The first few were a standard test mission file I have saved. Then I erased all the waypoints, uploaded that to clear the memory, then built a new simple mission and uploaded that. It still failed on 2 attempts at almost the same place again.
Basically, it seems after passing the first real waypoint, the throttle is cut to minimum and it plummets but with stabilization running. Investigation of the log file shows the issue appears to be a baro problem. The baro returns a crazy result like 300m for quite a period of time. This causes the program to cut the throttle to try and get it to descend to the WPAlt. You can clearly see this in the logs. The Baro comes back to reality sometime after switching to Stab.
I'll attach a sample log, from what I've seen they are all the same.