--
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diy...@googlegroups.com. To unsubscribe from this group, send email to diybio+un...@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To post to this group, send email to diy...@googlegroups.com.
To unsubscribe from this group, send email to diybio+un...@googlegroups.com.
Visit this group at http://groups.google.com/group/diybio?hl=en.
To view this discussion on the web visit https://groups.google.com/d/msg/diybio/-/UkWc-asDovoJ.
For more options, visit https://groups.google.com/groups/opt_out.
--
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diy...@googlegroups.com. To unsubscribe from this group, send email to diybio+un...@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To post to this group, send email to diy...@googlegroups.com.
To unsubscribe from this group, send email to diybio+un...@googlegroups.com.
Visit this group at http://groups.google.com/group/diybio?hl=en.
To view this discussion on the web visit https://groups.google.com/d/msg/diybio/-/UkWc-asDovoJ.
For more options, visit https://groups.google.com/groups/opt_out.
So, GFP on its own neither produces nor consumes a luciferin, but
Aquorin consumes a type of luciferin. However, Aquorin alone does not
produce or regenerate that luciferin, there's a separate pathway for that.
The inefficacy of coelenteramide indicates that the medusae are unable to recycle coelenterazine once it is used.http://www.pnas.org/content/98/20/11148.full
The paper you cited mentioned that "while the ultimate source of the coelenterazine in hydromedusae remains unknown, we believe that crustaceans are the most likely sources", and "the decapod shrimp Systellaspis debilis appears to have the ability to synthesize the molecule". So now the question becomes: can we find a GFP-like protein in these coelenterazine synthesizing shrimp?
They claim this is the first genomic sequence from any bioluminescent animal, and this organism has the same coelenterazine-dependent "photoprotein" luciferases as found in Renilla and A. victoria.
Unfortunately, even though they found *ten* luciferase genes, they did not find any GFP homologs. And they do not know whether this particular species requires coelenterazine in its diet for bioluminescence, or whether it can synthesize the coelenterazine itself - sounds like someone should go figure that out asap. Still, a good first step...
--
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diy...@googlegroups.com. To unsubscribe from this group, send email to diybio+un...@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To post to this group, send email to diy...@googlegroups.com.
To unsubscribe from this group, send email to diybio+un...@googlegroups.com.
Visit this group at http://groups.google.com/group/diybio?hl=en.
To view this discussion on the web visit https://groups.google.com/d/msg/diybio/-/KXxwMWfmYikJ.
Is there possibly a way to search for protein motifs based on the structure of Coelenterazine or Coelenteramide?
Presumably you need the rest of the structure of the GFP to make the cyclization reaction possible,
--
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diy...@googlegroups.com. To unsubscribe from this group, send email to diybio+un...@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To post to this group, send email to diy...@googlegroups.com.
To unsubscribe from this group, send email to diybio+un...@googlegroups.com.
Visit this group at http://groups.google.com/group/diybio?hl=en.
To view this discussion on the web visit https://groups.google.com/d/msg/diybio/-/nYvvS6WXGNAJ.
Presumably you need the rest of the structure of the GFP to make the cyclization reaction possible,
--
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diy...@googlegroups.com. To unsubscribe from this group, send email to diybio+un...@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To post to this group, send email to diy...@googlegroups.com.
To unsubscribe from this group, send email to diybio+un...@googlegroups.com.
Visit this group at http://groups.google.com/group/diybio?hl=en.
To view this discussion on the web visit https://groups.google.com/d/msg/diybio/-/nYvvS6WXGNAJ.
>RLuc8.6-535
MASKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPV ARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGSALAFHYAYEHQDRIKAI VHMESVVDVIESWMGWPDIEEELALIKSEEGEKMVLENNFFVETLLPSKIMRKLEPEEFAAYLEPFKEKG EVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPKLFIESDPGFFSNAIVEGAKKFPNTEFVK VKGLHFLQEDAPDEMGKYIKSFVERVLKNEQ
( from http://www.stanford.edu/~loening/plasmids/index.html )
ptide from 64 to 69, so *perha
But there is a very big question:
The pre-czn-peptide is based on this
http://www.bio.davidson.edu/courses/molbio/restricted/02gfpseq/GFPseqfig2.GIF
Nucleotide 736-739 (in frame!) is TAA so the jellyfish polymerase will stop and fall of the mRNA. Then it goes on with ATG TCC ..... That is junk DNA? I would expect it to be an apo-protein or something alike. But jellyfish machinery doesn't support operons, so this wouldn't be expresssed.
--
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diy...@googlegroups.com. To unsubscribe from this group, send email to diybio+un...@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To post to this group, send email to diy...@googlegroups.com.
To unsubscribe from this group, send email to diybio+un...@googlegroups.com.
Visit this group at http://groups.google.com/group/diybio?hl=en.
To view this discussion on the web visit https://groups.google.com/d/msg/diybio/-/MvzHwzTuTiAJ.
--
-- You received this message because you are subscribed to the Google Groups DIYbio group. To post to this group, send email to diy...@googlegroups.com. To unsubscribe from this group, send email to diybio+un...@googlegroups.com. For more options, visit this group at https://groups.google.com/d/forum/diybio?hl=en
Learn more at www.diybio.org
---
You received this message because you are subscribed to the Google Groups "DIYbio" group.
To post to this group, send email to diy...@googlegroups.com.
To unsubscribe from this group, send email to diybio+un...@googlegroups.com.
Visit this group at http://groups.google.com/group/diybio?hl=en.
On Thu, Dec 27, 2012 at 7:49 PM, Jordan Miller <jrd...@gmail.com> wrote:
we did the point mutation on eGFP optimized for bacterial expression with the induced vs. non-induced controls and coelenterazine as the positive control with purified Gaussia luciferase from a mammalian expression system. did not work as expected in our hands.
the ability to get this would revolutionize non invasive imaging since you wouldn't need to inject any luciferin/coelenterazine, so of it did work it would have been a big paper by the inventors. the most worrisome thing to me is they appear to have dropped the project.
Seems that this whole patent-not-working points to the coelenterazine not spontaneously forming from the modGFP alone. I bet there are some other enzymes in there that recycle/recharge the modGFP
--
The luminometer gives a reading of 1.5×107 hv/sec upon addition of luciferase, against a background of 4×105 hv/sec. The read-out from this instrument appears in FIG. 3.
That looks very much as it would have worked?
Or they were were lying - but why would they?
Does the patent say the modGFP was extracted from wildtype organism or overexpressed in a lab workhorse strain?
3. The method of claim 2 wherein means for effecting expression of said polynucleotide is E. coli strain BL21 (DE3)Lys S transformed with an expression vector comprising, 5' of said one or more sequences of nucleotide bases collectively encoding the amino acid sequence of pre-coelenterazine peptide, one or more appropriate regulatory control sequences which collectively enable expression of said polynucleotide; and one or more sequences of bases which collectively confer resistance to an antibiotic upon an organism.
4. The method of claim 3 wherein said means for effecting expression of said polynucleotide is the E. coli SMC2 (ATCC Accession No. 69553).
To generate a polynucleotide having these encoding sequences, one may introduce one or more point mutations into the cDNA for the GFP of A. victoria in the cDNA described in Prasher, et al., supra, using in vitro mutagenesis methods well known to those skilled in the art.
Parent Case Data: This application is a division of application Ser. No. 08/192,158, filed Feb. 4, 1994 now abandoned.
This code is degenerate; thus, the Arg at residue 109 may be encoded by nucleotide bases as CGT, but could, under the code, equally be CGC, CGA, CGG, AGA or AGG, and still encode for Arg. Similarly, nucleotide bases encoding Tyr as TAT could equally be TAC and still encode Tyr for residue 65 in the peptide. Alternatively, the polynucleotide may be a cDNA (or RNA equivalent) which includes, in addition to the nucleotides for Ser65 being altered from TCT to TAT, mu
Suitably, the regulatory element may be a promoter. Suitable promoter elements include a promoter activated by heavy metal (e.g. the one described in Freedman, et el. J. Biological Chemistry, 268: 2554, 1993, incorporated herein by reference); a P 450 promoter (e.g. the cytochrome P 450); or a promoter for a stress protein, (e.g., described in Stringham, et. el., Molecular Biology of the Cell, 3: 221, 1992), one of said stress proteins being a heat-shock protein. Other suitable promoters include that of the arabinose operon (phi 80 dara) or the colicin E1, galactose, alkaline phosphatase or tryptophan operons. Similarly the ADH system may be employed to provide expression in yeast. Alternatively, the regulatory element may be an enhancer.
The regulatory control sequences are operatively linked with the polypeptide comprising one or more sequences of nucleotide bases collectively encoding an amino acid sequence of a pre-coelenterazine peptide; i.e., the regulatory control sequences are placed on the polynucleotide at a distance 5' of the one or more sequences suitable to enable expression of the sequences.
Polynucleotides which bear one or more of such regulatory control sequences may be used in transforming organisms, as when suitably the polynucleotide is included in an expression vector. The regulatory control sequences are selected for compatibility with the organism into which the polynucleotide is to be incorporated by transformation, i.e., the regulatory control sequences are those which may be recognized by the transformed organism or cell and which will aid in controlling the expression of said polynucleotide in the transformed organism.
Thus when the organism to be transformed is E. coli, the regulatory control sequence may be a promoter (e.g., the T7, the SP6 or lac promoter); or transcription initiation sequences for ribosome binding (e.g. the Shine-Delgarno sequence and the start codon AUG). When the organism to be transformed is eucaryotic, the regulatory control sequences may include a heterologous or homologous promoter for RNA polymerase II and/or a start codon AUG. For example, when the target of transformation is a mammalian cell, the regulatory control sequence may be a promoter (e.g. the SP 40 or the bovine papilloma virus promoter). Suitable regulatory control sequences for use in other microbe, or in animal, or plant cells may be selected according to criteria well known to persons having skill in the art. All of these regulatory control sequences may be obtained commercially (individually or incorporated into a vector) or assembled by methods well known in the art.
Where the polynucleotide carries one or more appropriate regulatory control sequences, there may further be present one or more further sequences of bases which collectively confer resistance to an antibiotic when the polynucleotide is expressed in an organism. Such genes for antibiotic resistance are desirable components for expression vectors since they facilitate identification of transformed cells grown in the presence of antibiotics, and exert a continual pressure on the transformed organisms to retain and express the expression vectors.
could have been left out. It should have been left out, to make it understandable,
we did the point mutation on eGFP optimized for bacterial expression with the induced vs. non-induced controls and coelenterazine as the positive control with purified Gaussia luciferase from a mammalian expression system. did not work as expected in our hands.
--