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Thanks everyone for responding!
@ Scooter Morris:After trying to use the merged networks, I indeed tried to do analyses with just the IntAct interactome.Some analyses worked, but not all, and it still took a lot of time (hours). And during these processes the memory icon stays green.
@ Ankush Sharma:I increased the Java heap size to 10Gb, and tried to open a network (about 30K) and it is after 4 hours still stuck at finalizing with the memory icon being green most of the times.
@ Tim Hull:I had already checked the Cytoscape.vmoptions file and it was set at 11,5 Gb max, so I don't think this is the problem.
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Then something else is definitely going on, I think. Depending on the analysis you are doing, it really shouldn't take all that long, unless you are hitting some sort of limit. What analyses are you doing on the IntAct interactome?
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Hi Scooter,