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Farhan Vahdat Azad

Jan 31

Narrow down GSEA results

Hello, I wanted to ask about the GSEA results, which appear quite broad for example one of them is

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Hello, I wanted to ask about the GSEA results, which appear quite broad for example one of them is

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Vasileios Zogopoulos (Bill), John Elizarraras2

Jan 29

[WebGestalt WebServer] Discrepances in results in ORA, when a single vs multiple enrichment categories are selected

Hello Vasileios, Thank you for reaching out. This is intended behavior, albeit potentially confusing.

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[WebGestalt WebServer] Discrepances in results in ORA, when a single vs multiple enrichment categories are selected

Hello Vasileios, Thank you for reaching out. This is intended behavior, albeit potentially confusing.

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Katherine Stanley, … von caleb4

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Grace Mathew, … von caleb3

Jan 10

Query about difference in results

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SG Hong, John Elizarraras2

9/29/25

WebGestaltR not working

This appears to be fixed. Do you still have issues? It was likely caused by a unusually high amount

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WebGestaltR not working

This appears to be fixed. Do you still have issues? It was likely caused by a unusually high amount

9/29/25

seb...@gmail.com, … ilian atanassov6

9/19/25

noRedundant list of terms

Dear John, Thank you very much for the clarification. How do you deal with situations where the leaf

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noRedundant list of terms

Dear John, Thank you very much for the clarification. How do you deal with situations where the leaf

9/19/25

Amruta Vartak, John Elizarraras2

9/15/25

Hello, The format for the RNK file is two columns separated by a tab. The first column is the gene/

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Hello, The format for the RNK file is two columns separated by a tab. The first column is the gene/

9/15/25

8/6/25

WebGestalt not working now....

i hope it come back soon...

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WebGestalt not working now....

i hope it come back soon...

8/6/25

7/21/25

Error in Functional Database, cell type, human cell landscape

Hello community, I performed last month an over-representation analysis of human genes, using the

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Error in Functional Database, cell type, human cell landscape

Hello community, I performed last month an over-representation analysis of human genes, using the

7/21/25

ilian atanassov5

7/4/25

NES exactly 0 (zero)?

This exchange is relevant for this questions https://github.com/alserglab/fgsea/issues/124 On Friday,

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NES exactly 0 (zero)?

This exchange is relevant for this questions https://github.com/alserglab/fgsea/issues/124 On Friday,

7/4/25

Mferreira, … John Elizarraras3

4/25/25

Different results running GSEA on the same data

This change in results is due to the nature of GSEA. GSEA uses random permutations to get a

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Different results running GSEA on the same data

This change in results is due to the nature of GSEA. GSEA uses random permutations to get a

4/25/25

Klara Kuret, John Elizarraras4

4/9/25

how can FDR be greater than 1, webgestaltpy 0.3.1

Thank you very much for the explanation and the fix. Kind regards, Klara torek, 8. april 2025 ob 19:

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how can FDR be greater than 1, webgestaltpy 0.3.1

Thank you very much for the explanation and the fix. Kind regards, Klara torek, 8. april 2025 ob 19:

4/9/25

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