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Welcome to Sequenza User Group!!
Feel free to ask questions and expose your problems/difficulties using sequenza.
Proposal and ideas are welcome as well.

Enjoy!!

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Francesco Favero, Jackk Sonn2

Apr 11

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12/16/25

seqz_binning not reducing file size with high-coverage WGS data (>150x) + segmentation fault

Hello, I'm experiencing issues with sequenza-utils on high-coverage whole-genome sequencing data

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seqz_binning not reducing file size with high-coverage WGS data (>150x) + segmentation fault

Hello, I'm experiencing issues with sequenza-utils on high-coverage whole-genome sequencing data

12/16/25

Davide Cittaro, Michael Knudsen5

5/15/25

Memory error (paste exceeding 2^31-1 bytes)

I have had the same issue (it happens for noisy samples), and I've located the problem to this

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Memory error (paste exceeding 2^31-1 bytes)

I have had the same issue (it happens for noisy samples), and I've located the problem to this

5/15/25

virginia gazziero

5/13/25

Errors including r-sequenza in bioconda recipe

Hi, Thanks for the package! I am currently working at the development of a nf-core pipeline, and to

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Errors including r-sequenza in bioconda recipe

Hi, Thanks for the package! I am currently working at the development of a nf-core pipeline, and to

5/13/25

NILESH MUKHERJEE, Francesco Favero2

3/19/25

Sequenza v4.0.0 Error/Issue Debugging help required

Hi Nilesh, I've messed up adding some optimization working only in my laptop, which uses clang to

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Sequenza v4.0.0 Error/Issue Debugging help required

Hi Nilesh, I've messed up adding some optimization working only in my laptop, which uses clang to

3/19/25

2/8/25

How to use sequenza to detect focal homozygous deletions

Hi, I am preparing to work on a project to call CNV events in a number of WES tumor -normal pairs.

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How to use sequenza to detect focal homozygous deletions

Hi, I am preparing to work on a project to call CNV events in a number of WES tumor -normal pairs.

2/8/25

Michael Knudsen2

11/28/24

Corner case bug in sequenza.results?

Hi, Quick update on this issue. I have managed to get around it by adding seg.tab <- seg.tab[seg.

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Corner case bug in sequenza.results?

Hi, Quick update on this issue. I have managed to get around it by adding seg.tab <- seg.tab[seg.

11/28/24

Tusharika Rastogi

11/11/24

Sequenza.extract ERROR

Hello, I am trying to use the sequenza.extract function to process the seqz data. I produced the seqz

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Sequenza.extract ERROR

Hello, I am trying to use the sequenza.extract function to process the seqz data. I produced the seqz

11/11/24

Fenisha Shah, favero.f...@gmail.com3

6/27/24

Installation error with the latest version of sequenza

Hello Francesco That seems to work! Thank you for your prompt response. I would like to highlight

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Installation error with the latest version of sequenza

Hello Francesco That seems to work! Thank you for your prompt response. I would like to highlight

6/27/24

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