Groups
Conversations
All groups and messages
Send feedback to Google
Help
Training
Sign in
Groups
sed-ml-discuss
Conversations
About
sed-ml-discuss
Contact owners and managers
1–30 of 105
Simulation Experiment Description Markup Language
This is the official forum to discuss all things related to SED-ML.
official homepage
:
http://www.sed-ml.org/
github repository:
https://github.com/SED-ML
Mark all as read
Report group
0 selected
Rahuman Sheriff
Feb 27
BioModels Model of the year 2024 competition
Dear Colleagues, I hope you are doing well. I am reaching out to highlight the BioModels' Model
unread,
BioModels Model of the year 2024 competition
Dear Colleagues, I hope you are doing well. I am reaching out to highlight the BioModels' Model
Feb 27
Lucian Smith
Feb 6
One new editor and one run-off election
Matthias König has been elected to be one of our two new SED-ML editors for 2024-2026.
unread,
One new editor and one run-off election
Matthias König has been elected to be one of our two new SED-ML editors for 2024-2026.
Feb 6
Lucian Smith
Jan 16
Call for Votes: SED-ML Editors for 2024-2026
Dear all, This is a call for votes in the election of two SED-ML editors to replace Jonathan Karr and
unread,
Call for Votes: SED-ML Editors for 2024-2026
Dear all, This is a call for votes in the election of two SED-ML editors to replace Jonathan Karr and
Jan 16
Lucian Smith
Jan 2
SED-ML Level 1 Version 5
Happy New Year, everyone! This is an open call for comments on our draft specification for SED-ML
unread,
SED-ML Level 1 Version 5
Happy New Year, everyone! This is an open call for comments on our draft specification for SED-ML
Jan 2
Lucian Smith
12/20/23
Announce: new versions of Tellurium, Roadrunner, and Antimony
The Sauro lab is happy to announce new versions of three of our software packages: * Tellurium v2.2.9
unread,
Announce: new versions of Tellurium, Roadrunner, and Antimony
The Sauro lab is happy to announce new versions of three of our software packages: * Tellurium v2.2.9
12/20/23
Matthias König
12/13/23
JIB "COMBINE issue" 2024: Call for specifications and papers
Hi all There will be another special issue of the Journal of Integrative Bioinformatics covering
unread,
JIB "COMBINE issue" 2024: Call for specifications and papers
Hi all There will be another special issue of the Journal of Integrative Bioinformatics covering
12/13/23
Lucian Smith
,
Matthias König
3
12/10/23
Call for Nominations for SED-ML editors
Whoops! Re-activated. Nominate away! -Lucian On Sun, Dec 10, 2023 at 8:16 AM 'Matthias König'
unread,
Call for Nominations for SED-ML editors
Whoops! Re-activated. Nominate away! -Lucian On Sun, Dec 10, 2023 at 8:16 AM 'Matthias König'
12/10/23
Rahuman Sheriff
11/21/23
EMBL-EBI training course: Mathematics of Life 2024 & Model of the Year 2024 competition !!!
Dear Colleagues, Hope you are doing well and good. I would be grateful if you could circulate this
unread,
EMBL-EBI training course: Mathematics of Life 2024 & Model of the Year 2024 competition !!!
Dear Colleagues, Hope you are doing well and good. I would be grateful if you could circulate this
11/21/23
David Nickerson
8/14/23
Fwd: COMBINE 2023: October 5-8th, Farmington, CT
---------- Forwarded message --------- From: Blinov,Michael <bli...@uchc.edu> Date: Tue, 15 Aug
unread,
Fwd: COMBINE 2023: October 5-8th, Farmington, CT
---------- Forwarded message --------- From: Blinov,Michael <bli...@uchc.edu> Date: Tue, 15 Aug
8/14/23
Lucian Smith
2
5/24/23
HARMONY proposal #1: new KiSAO terms for multiple algorithms in one SED-ML file
These are now implemented in KiSAO, as 694 for 'ODE Solver' (with 'CVODE-like method'
unread,
HARMONY proposal #1: new KiSAO terms for multiple algorithms in one SED-ML file
These are now implemented in KiSAO, as 694 for 'ODE Solver' (with 'CVODE-like method'
5/24/23
Lucian Smith
5/2/23
HARMONY proposal #3: 'quick' L1v5 with generic Tasks and Changes.
One final suggestion, this from Frank. It would require an L1v5 release of SED-ML, but is fairly
unread,
HARMONY proposal #3: 'quick' L1v5 with generic Tasks and Changes.
One final suggestion, this from Frank. It would require an L1v5 release of SED-ML, but is fairly
5/2/23
Lucian Smith
5/2/23
HARMONY proposal #2: figure out KiSAO term for deriving absolute tolerances
I recently discovered that COPASI does not actually use the value it calls 'absolute tolerance
unread,
HARMONY proposal #2: figure out KiSAO term for deriving absolute tolerances
I recently discovered that COPASI does not actually use the value it calls 'absolute tolerance
5/2/23
Rahuman Sheriff
4/28/23
Fwd: Invitation: Global Alliance for Immune Prediction and Intervention
Dear COMBINE/SBML/SED-ML community members, This could be an interesting initiative and it will be
unread,
Fwd: Invitation: Global Alliance for Immune Prediction and Intervention
Dear COMBINE/SBML/SED-ML community members, This could be an interesting initiative and it will be
4/28/23
David Nickerson
2
3/29/23
HARMONY 2023 - registration now open!
Hi all, Just a reminder of the upcoming deadlines to submit abstracts and breakouts for HARMONY 2023
unread,
HARMONY 2023 - registration now open!
Hi all, Just a reminder of the upcoming deadlines to submit abstracts and breakouts for HARMONY 2023
3/29/23
David Nickerson
2/15/23
Invitation to hackathons on FAIR model indicators (Feb 17-Mar 3)
Dear all, Some of you might remember the Workshop on FAIR indicators that we ran in Berlin 2022
unread,
Invitation to hackathons on FAIR model indicators (Feb 17-Mar 3)
Dear all, Some of you might remember the Workshop on FAIR indicators that we ran in Berlin 2022
2/15/23
Lucian Smith
2/13/23
SED-ML Editor results: Eran Agmon and David Nickerson
Congratulations to Eran Agmon and David Nickerson, who received the most votes for the election of
unread,
SED-ML Editor results: Eran Agmon and David Nickerson
Congratulations to Eran Agmon and David Nickerson, who received the most votes for the election of
2/13/23
Lucian Smith
3
2/6/23
Call for Votes: SED-ML Editors for 2023-2025
This is the final reminder for the call for votes in the election of two SED-ML editors to replace
unread,
Call for Votes: SED-ML Editors for 2023-2025
This is the final reminder for the call for votes in the election of two SED-ML editors to replace
2/6/23
Frank Bergmann
2
12/22/22
Call for Nominations for SED-ML editors
Dear SED-ML community, this is a reminder, that we are currently looking for nominations for two new
unread,
Call for Nominations for SED-ML editors
Dear SED-ML community, this is a reminder, that we are currently looking for nominations for two new
12/22/22
David Nickerson
12/14/22
Fwd: [sbml-discuss] Survey about research software
---------- Forwarded message --------- From: Michael Hucka <mhu...@library.caltech.edu> Date:
unread,
Fwd: [sbml-discuss] Survey about research software
---------- Forwarded message --------- From: Michael Hucka <mhu...@library.caltech.edu> Date:
12/14/22
Rahuman Sheriff
11/21/22
BioModels - Model of the Year Competition 2023
Dear community members, We launched 'Model of the year' competition 2023 at ICSB2022 Berlin
unread,
BioModels - Model of the Year Competition 2023
Dear community members, We launched 'Model of the year' competition 2023 at ICSB2022 Berlin
11/21/22
Lucian Smith
10/28/22
My SED-ML Level 2 Proposal
(Note: I'm posting this both here and on the SED-ML Issue Tracker at https://github.com/SED-ML/
unread,
My SED-ML Level 2 Proposal
(Note: I'm posting this both here and on the SED-ML Issue Tracker at https://github.com/SED-ML/
10/28/22
Lucian Smith
9/30/22
SED-ML L2 Discussion
Hello, everyone! We're having a breakout session at COMBINE next week on Thursday at 9:00 AM
unread,
SED-ML L2 Discussion
Hello, everyone! We're having a breakout session at COMBINE next week on Thursday at 9:00 AM
9/30/22
David Nickerson
9/14/22
Fwd: COMBINE 2022 registration reminder and abstract submission for posters still open
Hi all, COMBINE 2022 is being held Oct 6-8 at Humboldt University of Berlin, Philippstraße 13, Haus
unread,
Fwd: COMBINE 2022 registration reminder and abstract submission for posters still open
Hi all, COMBINE 2022 is being held Oct 6-8 at Humboldt University of Berlin, Philippstraße 13, Haus
9/14/22
David Nickerson
8/26/22
Fwd: COMBINE 2022 and ICSB - abstract submission deadline extended, preliminary program available
Hi all, To bring COMBINE 2022 (https://combine-org.github.io/events/) into alignment with the
unread,
Fwd: COMBINE 2022 and ICSB - abstract submission deadline extended, preliminary program available
Hi all, To bring COMBINE 2022 (https://combine-org.github.io/events/) into alignment with the
8/26/22
David Nickerson
7/26/22
COMBINE 2022 in Berlin this October
Hi all, The plans for COMBINE 2022 are coming together. You can find details here: https://combine-
unread,
COMBINE 2022 in Berlin this October
Hi all, The plans for COMBINE 2022 are coming together. You can find details here: https://combine-
7/26/22
Matthias König
5/31/22
COMBINE 2022 - Save the date: 6-8 Oct, Berlin
Join us in October for our annual COMBINE Meeting! Save the Date: October, 6-8 (THU-SAT) Co-located
unread,
COMBINE 2022 - Save the date: 6-8 Oct, Berlin
Join us in October for our annual COMBINE Meeting! Save the Date: October, 6-8 (THU-SAT) Co-located
5/31/22
Lucian Smith
4/25/22
Breakout at HARMONY
Hey, everyone! There's a breakout on SED-ML during HARMONY at 9:45 Eastern. Come discuss the
unread,
Breakout at HARMONY
Hey, everyone! There's a breakout on SED-ML during HARMONY at 9:45 Eastern. Come discuss the
4/25/22
Matthias König
3/31/22
HARMONY 2022 - lightning talks submission deadline extended until Monday, April 4
Hi all, The deadline to submit lightning talks for HARMONY 2022 has been extended until Monday.
unread,
HARMONY 2022 - lightning talks submission deadline extended until Monday, April 4
Hi all, The deadline to submit lightning talks for HARMONY 2022 has been extended until Monday.
3/31/22
Matthias König
2/28/22
HARMONY 2022 (26-30 April)
Dear all, Save the date for HARMONY 2022! Date: 26-30 April 2022 Place: Washington, DC (USA) - Hybrid
unread,
HARMONY 2022 (26-30 April)
Dear all, Save the date for HARMONY 2022! Date: 26-30 April 2022 Place: Washington, DC (USA) - Hybrid
2/28/22
Frank Bergmann
2/8/22
2022-2024 Election Results
Dear SED-ML community, Lucian Smith has been elected as SED-ML Editors for the 2022-2024 term.
unread,
2022-2024 Election Results
Dear SED-ML community, Lucian Smith has been elected as SED-ML Editors for the 2022-2024 term.
2/8/22