R-hiphop

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Welcome, this is a forum for questions and discussion relating to the use of the R package hiphop.

hiphop is a software package designed in R for performing parentage assignment using bi-allelic genetic markers such as SNPs.hiphop v0.0.9 was released on CRAN 01/08/2020. https://CRAN.R-project.org/package=hiphop

An introduction to the concepts and technical details behind the software is available in:

1. the vignette associated with the package, which can be found here

2. the paper by Cockburn, A., Peñalba, J.V., Jaccoud, D., Kilian, A., Brouwer, L., Double, M.C., Margraf, N., Osmond, H.L., Kruuk, L.E.B. and van de Pol, M. (2021), hiphop: Improved paternity assignment among close relatives using a simple exclusion method for biallelic markers. Molecolur Ecology Resources https://doi.org/10.1111/1755-0998.13389

If you have a question concerning bugs, errors or warning messages please post here and provide R code and (a snippet of) data, such that we can reproduce the problem.

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10/19/23

Parent (dam and sire) dependencies

Hi, I'm having difficulty establishing the dependencies between the dam and sire parents. I have

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Parent (dam and sire) dependencies

Hi, I'm having difficulty establishing the dependencies between the dam and sire parents. I have

10/19/23

Joe Welklin, Andrew Cockburn3

6/16/23

Workflow to prepare SNP data for genotypes dataframe

Thanks, Andrew! I could not get DartR to load in R because another package it depends on (SNPRelate)

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Workflow to prepare SNP data for genotypes dataframe

Thanks, Andrew! I could not get DartR to load in R because another package it depends on (SNPRelate)

6/16/23

Hillary Smith, Martijn van de Pol3

3/2/23

using hiphop for coral parentage analysis

Hi Martijn, I had no idea you were at JCU! Would love to drop in. Are you free any time Tuesday 7th

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using hiphop for coral parentage analysis

Hi Martijn, I had no idea you were at JCU! Would love to drop in. Are you free any time Tuesday 7th

3/2/23

Evandro Tambarussi, Martijn van de Pol2

7/27/22

Using hiphop in trees

Hi Evandro, please have a look at the vignette associated with the package. It contains worked

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Using hiphop in trees

Hi Evandro, please have a look at the vignette associated with the package. It contains worked

7/27/22

Martijn van de Pol

4/30/21

hiphop paper out now

The paper describing the idea behind the hiphop approach is out now! It can be found here: https://

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hiphop paper out now

The paper describing the idea behind the hiphop approach is out now! It can be found here: https://

4/30/21

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