QuPath users

Hi, this Google Group is no longer maintained. The forum is now at https://forum.image.sc/tag/qupath

Hi, all, I wonder if I can create a classifier from multiple IF images. If so, can you advise me how

Hi, the QuPath forum is now at https://forum.image.sc/tags/qupath This one remains for posterity

In a script you can use print getCurrentImageData().getColorDeconvolutionStains() Please note that

Hi Henrik, It looks like the data files aren't being saved after you add the annotations. The

I tried the script but it rotates the annotations on their place. For me, as I've rotated the

I was not aware of this problem and this post as well until microscopyra warned me today. I talked to

Oh, and there you did! Good. Will try to help more there.

Here is an example of selecting annotation objects by their class. https://gist.github.com/Svidro/

Thank you!

The new forum location is listed at the top of this forum, all new questions should be directed there

Forum has moved to here: https://forum.image.sc/tags/qupath Please direct new posts there. OD is

Thanks micros, confirmed it works in m2 but not m1 Alan

Hi micros, thank you so much, I have it working! Here is an adapted version of the script for

I was playing around with Pete's script, linked here, and created my own variant in one of the

Huzzah! Bigger and better.

Ah, I think I just did what you did! I suspect you want to click "Live Prediction" option

And if you continue to get errors or non-results, please post the error from the Log/View menu (you

By default most commands (like cell detection) will work on the currently selected object. If you

If you want to get even crazier, you could probably script an ImageJ macro to do a rolling ball

Yes, Exactly! Thank you so much :) have a great day!

Hi Lorenzo-Have you tried it out with the suggestion from David for blood vessels density

It's currently not possible, for the reason miroscopyra gave. It would be helpful to have more

Yes, i use v0.2.0-m1. Thanks a lot for the fast response!

Hi CH, This sounds great - I've looked at the TCGA API a few times hoping to find a way to

Thanks for your replies! I just tested 0.2.0 and the the thumbnails and naming comes up just perfect!

I'd be interested in understanding how to write pyramids faster as well... perhaps best to start

Not imminently, but there have been in the past... and since I'm in Europe it's a bit easier

THanks micros

Great!