ProteomicsQA

Is there any quantitative measure/metric to measure the extent of Channel Bleeding in TMT experiments

For TimsTOF, I *think* that the typical diaPASEF ion mobility separation is for ~100ms. Is this

Hi Max, If this feature is still useful to you, please open an issue in this repo https://github.com/

Thanks Eric, I will have a look at it! Best, Viktoria Eric Deutsch schrieb am Mittwoch, 4. Mai 2022

Hi Dominik, I can think about two options but maybe more options exist (in OpenMS?): - there is the

Dear David, Have you been successful with the data recovery? I accidentally delete my thermo raw data

MS-Fragger too can export calibrated as well as uncalibrated MGF which you can use further. I guess

Hi Johannes, great, thanks a lot! Best regards, Viki johanne...@gmail.com schrieb am Freitag, 7. Mai

Hi, Adriana. I have routinely used this ProteoWizard msConvert line to produce mzML files for later

You can work with monolithic columns from Thermo to seperate peptides and proteins. Am Mittwoch, 22.

In South Africa, most graduate coursework ends at the B.Sc. Honours level. I teach lectures on

Thanks David, I'm going through the paper now.... On Monday, 2 December 2019 01:54:05 UTC-5,

Hi Michael, Isobar is not maintained anymore for a longer time and I suggest you to use eg the R

Dear all, does any of you know of any reference information on the scan header information in Thermo

I see that PRIDE supports Aspera protocol. If that's still true, it's likely to be a

Hi Brian, thank you for your answer. I will "play" with it then. I loooked on the page with

In Orbitrap instruments, my understanding is that the ~3.5 orders of magnitude instrascan dynamic

Dear Gautam, It's difficult to answer your question because it totally depends on your full setup

Adding to what David wrote. I can definetly say that there is no obvious signal in Thermo RAW file (

Hi Gautam, Here is a manuscript we published 2 years ago that should be useful for your research:

Hi Timo, thank you for your answer. I will look into it and see if I would like to go this way. Best

I know this is a very old thread. But I got the same error today using MSstats package to load my

Hi Gautam, Good news: there is in fact SWIG support in ProteoWizard, developed for use with Java. Bad

Hi Gautam, This is a typical problem when using 15N labeling, the shape of the isotopic pattern of

HI David, Thanks for the answer. The observation I mentioned in my original post was based on data

Hej Viki, Also PIA (in KNIME) and PrideInspector allow for viewing and some annotation of MS/MS

Hi, Vladimir I just saw the spectra already. i see double peaks around 131.138180 and 131.14449. Now,

Thanks Vladimir for your thoughtful and quick response. On Wednesday, November 29, 2017 at 10:04:02

Hi, Nikiana, according to MaxQuant tables description (one can find it in results folder with the

Hi Anne, Thank you very much for replying and really sorry for my late. Somehow I lost the