MS Amanda

Dear Gretchen and Daniel, sorry also for the late reply, I was out of office in the last weeks. I

Dear all, we just released a new MS Amanda version and upgraded it to 3.0 (v 3.0.21.049). MS Amanda

Hi Gerhard, This is Gretchen, working with Daniel to resolve this issue. Thanks for your help with

Hi Mario, thanks a lot for the detailed feedback and the suggestions, we highly appreciate that! The

Hi Danyl, can you please create a bug report in PD 2.4 (Tools -> Create Bug Report) and send that

Hi! this is not normal ;) We are unfortunately currently having issues with the webpage, but we are

Hi! Great to hear, that you like MS Amanda :) The maximum number for the max rank property already is

Hi Filippo, I forwarded your request to the developers of the node, they will look into that! Best

Dear Gerhard, I was going to post another question about limma at 'IMP PD Nodes' google group

Hey Viktoria, That is great to hear. Sadly though, I am only using MS Amanda in conjunction with PD.

Hi Andy, sorry for the late reply, that message somehow got lost...So you would expect the value to

Thank you very much! I will test and give you feedback as soon as possible. Best, -C On Thu, Mar 18,

Please, check if the installer at Protein Chemistry Facility (imp.ac.at) is OK. It doesn't do

What if you know the person personal On Mon, Feb 1, 2021, 7:50 AM Viktoria Dorfer <viktoria.dorfer

I guess it is tradeoff speed/resources. thanks! Carlos On Fri, Jan 29, 2021 at 5:47 PM Viktoria

this is really helpful! Carlos On Fri, Jan 29, 2021 at 5:42 PM Viktoria Dorfer <viktoria.dorfer@fh

Hi! Yes, if you run MS Amanda within Skyline a Percolator validation is performed after the search.

Hi Da! great that it finally works! Concerning the different durations of the files: this is expected

Hi Nick, in the standalone version you can specify neutral losses for user-defined modifications by

Thanks Victoria, now it works! By the way, how to set up several threads for DB searching in the

Hi Victoria, thank you!!! Now it finally works, and I managed to import MS Amanda results into

Hi Viktoria, Thanks! I can confirm that it now works as expected. :) Best regards, Harald On

Hi Carrie, MS Amanda can unfortunately not tell you, which of your 10 samples have been

Hi Viktoria, Thanks, I already saw the release notes. Can't wait to get my hands on it! :) A. On

Hi Andrew, we have fixed that issue in the new standalone version (v. 2.0.0.13723). There is now an

Hi Andy, we finally have a new version of MS Amanda available that includes your requested changes on

Hi, the new MS Amanda standalone versions now enables to have the same database name if they are in

I also just saw, that there was an error in your Processing Step C, as ptmRS was not executed and

Hi Erik, thanks for reporting that! I had a look at the code and it is definitely a bug but just a

Hi Simon, the matched ions output is in the current release in the PD version and will be in the next