micca users

Dear Davide, I installed MICCA on my personal PC and I was able to merge, trim, and filter all reads;

Hi, after 2 weeks for the msa step, I finally got my msa.fasta file; however, executing nohup micca

Dear Bukola, did you set the environment variable RDPPATH? (http://micca.org/docs/latest/install.html

Dear Davide and users, I am using micca otu command to pick "haplotypes" using the method

Dear MICCA users, I tried all the commands for Picking OTUs for use in PICRUSt when I perform micca

I need to do the Closed-reference OTU table computed against the Greengenes reference and I can not

Dear Micca users, I would like to know what is a doubleton for you: a) a single sequence that occurs

The tag "size" shows how many times the chimeric sequence has been found. Ciao, Davide

hi, in my understanding, 0.9*min(sample_sums(ps)) means that you are setting the threshold of the

See https://groups.google.com/d/msg/micca-users/C_qXmO3vxDI/mIdSMFqdBAAJ

SOLVED: the PR2 database contains Protist only! Ciao, Davide

See https://github.com/compmetagen/micca/blob/1.6.2/CHANGES.rst

This release fix the "new-line error" in the classify command.

Dear all, the error was fixed in version 1.6.1. Now the taxonomy files are opened in universal new-

New in version 1.6: swarm updated to version 2.1.12; Now the mergepairs command allows merging