The ETE toolkit

Hi, Thank you very much for your quick reply. I didn't realize the basic ete3 tools work without

Hi Vishal, we have already released in our main branch actually. ETE Toolkit has already updated to

Hello, I have searched everywhere, but I cannot find a way to create a graph that shows the node name

hi i am trying to make a figure with phylotree and MSA. but i am facing some issues 1) phylogentic

hi i am new to ete3 i want to make a representation somewhat like the one displayed here http://

Hi Elizaveta! Thanks for the kind word! The method get_descdendant_taxa() will get the descendant

Hi, Im trying to use ETE4 to create a tree of life representation, much like the one you have

I am looking for a way to visualize a mixed sequence alignment - comprising of DNA nucleotides as

A simple, albeit unconventional solution would be to replace the original leaf name with an empty

Were you trying on the http://etetoolkit.org/treeview/? If yes, it's just a experimental version.

Thanks for your reply! I will look into it Best, Ziqi 在2023年11月8日星期三 UTC+1 15:48:08<jrichar...@

Hi! Sorry for the late response as we are currently upgrating ete3 to ete4. In ete4 we adopt a new

Hi! I guess you refered to http://etetoolkit.org/treeview/. It has been the demo version for years,

Hello, I would like to build a tree representation next to a heatmap of the sequence identity matrix

Hi Kitty, sorry for such a slow reply. As far as I am concerned, ete evol module doesn't have any

Hello! I see, this error often happens could be because during deploy software, it doesn't deploy

Hi! I noticed your python version is 3.9. It could be because of pmodeltest, a tool in ete3_toolchain

hi! yes, ete3 support tree node annotation so you can modify the node features easily, although # we

hi ! I am interested in getting the info of gene ID for each node. I have over 200 "genes"

Hi! It seems this is on the server where qt cannot be loaded, please try the following line by add

Hi! Yes! Currently we are advancing toward ete4 where we will engage more with the interactive

hi, so far the papameter of border is not available in the BarChartFace object, but you can change it

Hi, I noticed that the function 't.get_common_ancestor' can give you the first common

Hi, this error occured because it requires PyQt4, please find more information in this thread https:/

Dear Ziqi, Thanks for your help. It is finally working. I had to solve a few other problems of

Hi! Can you provide the input .faa and cogs file for the run? Best, Ziqi 在2022年10月25日星期二 UTC+2 13:49:

Hi! Thanks for mentioning this, currently we are moving forward to ete4 which will provide

Hi there: Would someone be willing to share a bit of ete3 code that collapses nodes below a minimum

Hi, this error shows because lack of python-qt. One of the options to install is $ sudo pip install

Hi francesco, I do not know what ordering preference is used in ggtree. In ETE, you could traverse