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matteobenelli
6/12/20
Announcement
a message for all the users from the developer
To all the users of EricScript, thank you very much for using EricScript! You are so many and this is
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Announcement
a message for all the users from the developer
To all the users of EricScript, thank you very much for using EricScript! You are so many and this is
6/12/20
Pawan Poudel
6/11/20
simulating gene fusions using ericscript simulator
Hi, I am trying to simulate the reads using the Ericscript and I am getting the following error
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simulating gene fusions using ericscript simulator
Hi, I am trying to simulate the reads using the Ericscript and I am getting the following error
6/11/20
megank...@gmail.com
, …
Alon Galor
3
6/8/20
Error: No lines available in
Megan, were you able to solve this issue by chance? Thanks a lot, Alon On Sunday, March 11, 2018 at
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Error: No lines available in
Megan, were you able to solve this issue by chance? Thanks a lot, Alon On Sunday, March 11, 2018 at
6/8/20
Alon Galor
6/8/20
paired reads have different names
Hello, I hope this message finds you well! I am attempting to use ericscript and am encountering an
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paired reads have different names
Hello, I hope this message finds you well! I am attempting to use ericscript and am encountering an
6/8/20
mary...@genomezoo.net
,
Alex Lee
2
7/23/19
no package called 'ada' no"digest" no "kernlab"
Hi so ericscript requires R to run. The installation manual was not very clear on this thus the issue
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no package called 'ada' no"digest" no "kernlab"
Hi so ericscript requires R to run. The installation manual was not very clear on this thus the issue
7/23/19
Peter Waltman
, …
Alex Lee
10
7/23/19
ericscript.pl --printdb doesn't show available refids
Hi all just wanted to chime in since I was also having similar issue. The best solution and probably
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ericscript.pl --printdb doesn't show available refids
Hi all just wanted to chime in since I was also having similar issue. The best solution and probably
7/23/19
Francesco Lumachi
, …
bioinfo-m
9
5/8/19
Inconsistency with *.fastq and *.fastq.gz
在 2016年9月29日星期四 UTC+8下午5:49:12,matteobenelli写道: Ciao Francesco, the analysis should result the same.
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Inconsistency with *.fastq and *.fastq.gz
在 2016年9月29日星期四 UTC+8下午5:49:12,matteobenelli写道: Ciao Francesco, the analysis should result the same.
5/8/19
Jeff Szymanski
, …
Jagadheshwar Balan
7
4/18/19
error in read.table
Thanks Jeff for the quick reply. I could not get a resolution to this issue. A tool that was highly
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error in read.table
Thanks Jeff for the quick reply. I could not get a resolution to this issue. A tool that was highly
4/18/19
Yoan Bouzin
, …
MMTerpstra
5
1/17/19
Upgrade database to ensembl release 94
OK thanks for your effort ill link it to the github On Wednesday, January 16, 2019 at 2:20:22 PM UTC+
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Upgrade database to ensembl release 94
OK thanks for your effort ill link it to the github On Wednesday, January 16, 2019 at 2:20:22 PM UTC+
1/17/19
Harry Yang
, …
luome...@gmail.com
13
12/9/18
DB problem
how to solve the problem?Thanks! 在 2016年4月13日星期三 UTC+8下午1:07:32,Harry Yang写道: Hello I was trying to
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DB problem
how to solve the problem?Thanks! 在 2016年4月13日星期三 UTC+8下午1:07:32,Harry Yang写道: Hello I was trying to
12/9/18
trodrig...@gmail.com
11/24/18
Samtools installation
Hi all, Is there a version of ericscript that will run with a more recent version of samtools?
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Samtools installation
Hi all, Is there a version of ericscript that will run with a more recent version of samtools?
11/24/18
Rohn Wood
6/15/18
Current State of Ericscript
Would anyone be willing to hazard a summary statement on the current state of EricScript? From what I
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Current State of Ericscript
Would anyone be willing to hazard a summary statement on the current state of EricScript? From what I
6/15/18
Allyson
4/30/18
Error when writing results
Hi all, I am rather unfamiliar with R which is used to develop EricScript so if anyone is wiling to
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Error when writing results
Hi all, I am rather unfamiliar with R which is used to develop EricScript so if anyone is wiling to
4/30/18
mary...@genomezoo.net
,
Peter Waltman
3
3/27/18
Problems with human database
I got the same error. Would be great if the issue could/would be resolved so that we can use the
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Problems with human database
I got the same error. Would be great if the issue could/would be resolved so that we can use the
3/27/18
veronic...@gmail.com
2
3/19/18
segmentation fault
Sorry, I forgot to post the output of the process: WARNING: ignoring environment value of R_HOME [
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segmentation fault
Sorry, I forgot to post the output of the process: WARNING: ignoring environment value of R_HOME [
3/19/18
Eric Deveaud
, …
mary...@genomezoo.net
7
2/15/18
ericscript.pl --downdb fail :: wrong generated url
What is the link for 0.5.5b? On Wednesday, May 4, 2016 at 8:34:06 AM UTC-5, Eric Deveaud wrote: Le
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ericscript.pl --downdb fail :: wrong generated url
What is the link for 0.5.5b? On Wednesday, May 4, 2016 at 8:34:06 AM UTC-5, Eric Deveaud wrote: Le
2/15/18
Vang Le Quy
11/10/17
Git/svn access and how to contribute?
There are some parts in Ericscript I would like to experiment with. It will be easier to have access
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Git/svn access and how to contribute?
There are some parts in Ericscript I would like to experiment with. It will be easier to have access
11/10/17
Sanket Desai
11/3/17
Blacklist column in EricScript output/ its meaning??
Hello all, I am sure this question must have been either addressed to or I should be missing
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Blacklist column in EricScript output/ its meaning??
Hello all, I am sure this question must have been either addressed to or I should be missing
11/3/17
Christina May
,
Kyle Voytovich
3
7/26/17
Error in last step of ericscript
I found a solution to the problem. In the file [ericscriptfolder]/lib/R/MakeResults.R at line 50, the
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Error in last step of ericscript
I found a solution to the problem. In the file [ericscriptfolder]/lib/R/MakeResults.R at line 50, the
7/26/17
antonio.ag...@gmail.com
,
Matteo Benelli
5
6/28/17
Results
Hi Matteo, thanks I used a bwa 0.7.10 and it's working as before. I have this message: [
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Results
Hi Matteo, thanks I used a bwa 0.7.10 and it's working as before. I have this message: [
6/28/17
sandeep singh
6/8/17
breakpoint coordinates in the ericscript output are 0-based or 1-based?
Can anyone please tell me whether the breakpoint coordinates given in the ericscript output are 0-
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breakpoint coordinates in the ericscript output are 0-based or 1-based?
Can anyone please tell me whether the breakpoint coordinates given in the ericscript output are 0-
6/8/17
ivan
, …
sandeep singh
3
5/30/17
Error when running ericscript
https://groups.google.com/forum/#!msg/ericscript/fONNs5ITUnU/92h79VDaZTAJ read all comments or check
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Error when running ericscript
https://groups.google.com/forum/#!msg/ericscript/fONNs5ITUnU/92h79VDaZTAJ read all comments or check
5/30/17
Komal Rathi
,
sandeep singh
3
5/30/17
No chimeric transcripts found with Ensembl v75
https://groups.google.com/forum/#!msg/ericscript/fONNs5ITUnU/92h79VDaZTAJ read all comments or check
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No chimeric transcripts found with Ensembl v75
https://groups.google.com/forum/#!msg/ericscript/fONNs5ITUnU/92h79VDaZTAJ read all comments or check
5/30/17
sandeep singh
5/30/17
how to resume ericscript process which is already run half steps and terminated
Hello everyone, I am new to ericscript and the posts in this group were very helpful to successfully
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how to resume ericscript process which is already run half steps and terminated
Hello everyone, I am new to ericscript and the posts in this group were very helpful to successfully
5/30/17
Nirvana Kid
, …
Komal Rathi
4
5/26/17
Not recognizing the DB
Hi Matteo, Why does the website not have Ensembl 75? Thanks, Komal On Friday, 19 May 2017 03:12:34
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Not recognizing the DB
Hi Matteo, Why does the website not have Ensembl 75? Thanks, Komal On Friday, 19 May 2017 03:12:34
5/26/17
zc3623...@gmail.com
4/28/17
DB issue
Hi, I found that the downloadable db version in the forum is hg38, could you please send me a copy or
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DB issue
Hi, I found that the downloadable db version in the forum is hg38, could you please send me a copy or
4/28/17
Quentin Bayard
3/9/17
Filtered out fusions
Hello, First, thanks for your program. I try to find a specific fusion using EricScript but this
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Filtered out fusions
Hello, First, thanks for your program. I try to find a specific fusion using EricScript but this
3/9/17
Asher Haug-Baltzell
,
Matteo Benelli
2
2/14/17
Other, on-ensembl sources?
Hi Asher, this is not possible at the moment. You can have a look at the scripts that generate the
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Other, on-ensembl sources?
Hi Asher, this is not possible at the moment. You can have a look at the scripts that generate the
2/14/17
Sydney Bader
,
Matteo Benelli
2
2/13/17
Error: can't find sigest
Hi Sidney, I never saw an error like that. The only idea that came in mind is to re-install the
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Error: can't find sigest
Hi Sidney, I never saw an error like that. The only idea that came in mind is to re-install the
2/13/17
Charles MA
, …
Alex Lee
3
1/26/17
How to differentiate between in-frame and out-of-frame fusions?
Hi Charles, I use PRADA's frame testing for this and works well. its not perfect since it
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How to differentiate between in-frame and out-of-frame fusions?
Hi Charles, I use PRADA's frame testing for this and works well. its not perfect since it
1/26/17