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A. Reese
Mar 22
bufio.scanner: token too long kills elprep sfm on filter step
Hello. I am unable to run elprep sfm, due to a bufio panic error during the elprep filter step. I did
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bufio.scanner: token too long kills elprep sfm on filter step
Hello. I am unable to run elprep sfm, due to a bufio panic error during the elprep filter step. I did
Mar 22
Stephane Plaisance
3
8/29/22
elprep sfm and filter runs die
Stupid me, I used mappings against a previous reference. Never mind! @Admin You may delete this
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elprep sfm and filter runs die
Stupid me, I used mappings against a previous reference. Never mind! @Admin You may delete this
8/29/22
Stephane Plaisance
,
Charlotte Herzeel (imec)
3
8/23/22
is preprocessing with elprep filter needed?
Dear Charlotte, I had understood it wrongly and was using sfm while I have 512GB RAM and could
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is preprocessing with elprep filter needed?
Dear Charlotte, I had understood it wrongly and was using sfm while I have 512GB RAM and could
8/23/22
Yegor Korovin
3/7/22
<NON_REF> in .vcf.gz ALT column
Hallo, I have some issues with output of elprep. I'm running elprep as follows: elprep filter
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<NON_REF> in .vcf.gz ALT column
Hallo, I have some issues with output of elprep. I'm running elprep as follows: elprep filter
3/7/22
geertva...@gmail.com
2
2/16/22
elprep 5.1.2 sorting issue
EDIT : on closer investigation, this only seems to happen for PRE-SORTED BAM files, in contrast to
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elprep 5.1.2 sorting issue
EDIT : on closer investigation, this only seems to happen for PRE-SORTED BAM files, in contrast to
2/16/22
Anne Mensink
,
Charlotte Herzeel (imec)
3
10/28/21
Sorted CRAM output
Hi Charlotte, We were indeed using v4.1.6 and the input BAM files we used contained different read
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Sorted CRAM output
Hi Charlotte, We were indeed using v4.1.6 and the input BAM files we used contained different read
10/28/21
Brian Simison
,
Charlotte Herzeel (imec)
2
6/2/21
sfm option
Hi, I have a number of different answers to your question: - The sfm mode is designed to reduce RAM
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sfm option
Hi, I have a number of different answers to your question: - The sfm mode is designed to reduce RAM
6/2/21
Brian Simison
,
Charlotte Herzeel (imec)
3
5/31/21
known-sites
I created a flow diagram to help describe the steps I have taken to create a de novo know-sites list,
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known-sites
I created a flow diagram to help describe the steps I have taken to create a de novo know-sites list,
5/31/21
Pascal Costanza
2/9/21
elPrep 5 released
Last December, we have released a new version of elPrep, namely elPrep 5, with binaries of that
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elPrep 5 released
Last December, we have released a new version of elPrep, namely elPrep 5, with binaries of that
2/9/21
Pascal Costanza
6/4/19
Comparison of Go, Java, and C++ for implementing elPrep
Our paper on comparing Go, Java, and C++ for implementing elPrep has been published in BMC
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Comparison of Go, Java, and C++ for implementing elPrep
Our paper on comparing Go, Java, and C++ for implementing elPrep has been published in BMC
6/4/19
Charlotte Herzeel
10/19/18
Announcement
elprep4.0.0 released
Hi, The ExaScience Life Lab at Imec is happy to announce the release of elPrep4.0, an open-source,
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Announcement
elprep4.0.0 released
Hi, The ExaScience Life Lab at Imec is happy to announce the release of elPrep4.0, an open-source,
10/19/18
Pascal Costanza
10/16/17
elPrep version 3.0 released
Hi, Since about two weeks, the new elPrep version 3.0 is available at our GitHub repository. The
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elPrep version 3.0 released
Hi, Since about two weeks, the new elPrep version 3.0 is available at our GitHub repository. The
10/16/17