cytoscape-discuss - Google Groups

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As of November 2016, this Google Group has been moved to Cytoscape Helpdesk. If you are developing or maintaining your own Cytoscape app, then please consider the cytoscape-app-dev group.

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Alexander Pico, Barry Demchak2

8/5/16

Moving to Cytoscape Helpdesk

From: cytoscap...@googlegroups.com [mailto:cytoscap...@googlegroups.com] On Behalf Of

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Moving to Cytoscape Helpdesk

From: cytoscap...@googlegroups.com [mailto:cytoscap...@googlegroups.com] On Behalf Of

8/5/16

5/23/24

Hi All, I have a set of paths sourced at and destined to certain nodes in a graph, which are computed

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Hi All, I have a set of paths sourced at and destined to certain nodes in a graph, which are computed

5/23/24

giand...@gmail.com

4/4/19

Appello #ScienzaInParlamento

Ciao, Ho appena firmato la petizione "Appello #ScienzaInParlamento" e vorrei chiederti di

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Appello #ScienzaInParlamento

Ciao, Ho appena firmato la petizione "Appello #ScienzaInParlamento" e vorrei chiederti di

4/4/19

Md Izhar Ashraf

3/20/18

how to add different images to nodes automatically

Dear all, I have a big network of size N and want to display each node by images( different image for

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how to add different images to nodes automatically

Dear all, I have a big network of size N and want to display each node by images( different image for

3/20/18

8/28/17

Announcing Newt version 1.0

=== Apologies for cross-posting === Dear All, We are proud to announce public release of Newt version

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Announcing Newt version 1.0

=== Apologies for cross-posting === Dear All, We are proud to announce public release of Newt version

8/28/17

crowm...@outlook.com, … Barry Demchak5

8/7/17

WGCNA pipeline to display gene-network modules in rcytoscapejs

Hi, Alp -- I'm moving this to cytoscape...@googlegroups.com ... ... the cytoscape-discuss

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WGCNA pipeline to display gene-network modules in rcytoscapejs

Hi, Alp -- I'm moving this to cytoscape...@googlegroups.com ... ... the cytoscape-discuss

8/7/17

aouiche...@yahoo.fr, … Barry Demchak3

7/15/17

How to collect multiple networks together and color theim on different colors on cytoscape?

Hi, Alex and aouichechaimaa ... ... Forwarding this to Cytoscape...@googlegroups.com ... please

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How to collect multiple networks together and color theim on different colors on cytoscape?

Hi, Alex and aouichechaimaa ... ... Forwarding this to Cytoscape...@googlegroups.com ... please

7/15/17

Rafael de Felício, Barry Demchak2

4/24/17

NodeCharts plugin for Molecular Networking

On Monday, April 24, 2017 at 2:01:50 PM UTC-7, Rafael de Felício wrote: > Hello everyone, >

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NodeCharts plugin for Molecular Networking

On Monday, April 24, 2017 at 2:01:50 PM UTC-7, Rafael de Felício wrote: > Hello everyone, >

4/24/17

Marco Antoniotti

3/2/17

[CDAC 2017] Call for Participation - Workshop and School on Cancer Development and Complexity, May 23 - May 26, 2017, Como, Italy

Call for Participation Lake Como Workshop and School on Cancer Development and Complexity 2017 ======

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[CDAC 2017] Call for Participation - Workshop and School on Cancer Development and Complexity, May 23 - May 26, 2017, Como, Italy

Call for Participation Lake Como Workshop and School on Cancer Development and Complexity 2017 ======

3/2/17

Lilit Nersisyan

2/28/17

synchtaskmanager dialogue

Dear Cytoscape community, I'm using synchtaskmanager, as I'm executing tasks that should wait

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synchtaskmanager dialogue

Dear Cytoscape community, I'm using synchtaskmanager, as I'm executing tasks that should wait

2/28/17

Elham Dallalbashi, … Barry Demchak4

2/1/17

role of R value in co-expression network

Hi, all – The Discuss forum has been closed and is now transferred to the HelpDesk forum. Please

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role of R value in co-expression network

Hi, all – The Discuss forum has been closed and is now transferred to the HelpDesk forum. Please

2/1/17

1/3/17

NRNB Google Summer of Code 2017 - Calling All Mentors

GSoC 2017 is coming up and the National Resource for Network Biology (NRNB) will be applying as a

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NRNB Google Summer of Code 2017 - Calling All Mentors

GSoC 2017 is coming up and the National Resource for Network Biology (NRNB) will be applying as a

1/3/17

Snehal Shekatkar, Barry Demchak3

11/30/16

stackexchange site for Complex networks

Dear all, Thanks for all your responses. We have finally got first success: 60 followers! But we

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stackexchange site for Complex networks

Dear all, Thanks for all your responses. We have finally got first success: 60 followers! But we

11/30/16

Charly Mignon, … alex.pico3

11/10/16

node in a shape (rectangle)

Hi Karl, There isn't a quick fix for this... You could include a new column in your data table

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node in a shape (rectangle)

Hi Karl, There isn't a quick fix for this... You could include a new column in your data table

11/10/16

Massimiliano Cardinale, Barry Demchak2

11/2/16

Publication DOI: 10.1111/1462-2920.13524

Thank you, Massimiliano .. I have forwarded this to the person who can post it. Please note that the

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Publication DOI: 10.1111/1462-2920.13524

Thank you, Massimiliano .. I have forwarded this to the person who can post it. Please note that the

11/2/16

Pascal KREZEL, Barry Demchak3

11/2/16

"HTTPError: HTTP Error 504: Gateway Time-ou"t with get_node_table()

Pascal ... This message was forwarded to cytoscape...@googlegroups.com ... The cytoscape-

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"HTTPError: HTTP Error 504: Gateway Time-ou"t with get_node_table()

Pascal ... This message was forwarded to cytoscape...@googlegroups.com ... The cytoscape-

11/2/16

11/2/16

Error in function "view1.update_node_views"

Hi, The function "view1.update_node_views" used in "view_api_samples.ipnb" writes

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Error in function "view1.update_node_views"

Hi, The function "view1.update_node_views" used in "view_api_samples.ipnb" writes

11/2/16

10/11/16

GO term levels cytoscape

Hi everyone, I have list of proteins and their GO ids from uniprot. I want to get GO levels from root

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GO term levels cytoscape

Hi everyone, I have list of proteins and their GO ids from uniprot. I want to get GO levels from root

10/11/16

9/27/16

Bug in universal import client

I noticed a bug while using the universal import client. It seems the 'Source database'

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Bug in universal import client

I noticed a bug while using the universal import client. It seems the 'Source database'

9/27/16

Akanksha Gupta, Duc-Hau, Le3

8/16/16

regarding gpec : please help

On Monday, December 30, 2013 at 3:42:17 PM UTC+5:30, Hau wrote: > Hi, > > > I am the

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regarding gpec : please help

On Monday, December 30, 2013 at 3:42:17 PM UTC+5:30, Hau wrote: > Hi, > > > I am the

8/16/16

Dolunay, … Barry Demchak3

8/15/16

Importing cyjs (json) file into cytoscape.js

The cytoscape-discuss forum has been merged into cytoscape...@googlegroups.com I have forwarded

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Importing cyjs (json) file into cytoscape.js

The cytoscape-discuss forum has been merged into cytoscape...@googlegroups.com I have forwarded

8/15/16

Kristin Kaiser, Barry Demchak2

8/15/16

Continuous mapping via Bypass?

The cytoscape-discuss forum has been merged into cytoscape...@googlegroups.com I have forwarded

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Continuous mapping via Bypass?

The cytoscape-discuss forum has been merged into cytoscape...@googlegroups.com I have forwarded

8/15/16

fabienne...@uni-rostock.de

8/2/16

Survey - support for biological modelling

Dear Sir or Madam, In my master thesis at the University of Rostock I investigate tool support for

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Survey - support for biological modelling

Dear Sir or Madam, In my master thesis at the University of Rostock I investigate tool support for

8/2/16

Martin Cerny, Barry Demchak2

7/28/16

Re: Programmatically click on menu item

Answered on cytoscap...@googlegroups.com On Thursday, July 21, 2016 at 10:00:41 PM UTC-7,

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Re: Programmatically click on menu item

Answered on cytoscap...@googlegroups.com On Thursday, July 21, 2016 at 10:00:41 PM UTC-7,

7/28/16

Ruth Isserlin, Julia Gustavsen4

7/28/16

Get existing cytoscape window from RCy3

Hi Ruth, Glad to hear that it finally worked. One idea for the troubles might be that the latest

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Get existing cytoscape window from RCy3

Hi Ruth, Glad to hear that it finally worked. One idea for the troubles might be that the latest

7/28/16

Hervé Diedie, … Matthias König3

7/26/16

error in topological coefficient calculation ?

Stelzl, U., et al.: A human protein-protein interaction network: a resource for annotating the

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error in topological coefficient calculation ?

Stelzl, U., et al.: A human protein-protein interaction network: a resource for annotating the

7/26/16

Thomas Pfau, Matthias König3

7/20/16

Access to static fields in cytoscape core

I opened an issue http://code.cytoscape.org/redmine/issues/3638 I would be willing to contribute this

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Access to static fields in cytoscape core

I opened an issue http://code.cytoscape.org/redmine/issues/3638 I would be willing to contribute this

7/20/16

dksc...@uw.edu, Barry Demchak2

7/18/16

load data from sql for cytoscape.js

forwarded to cytoscape...@googlegroups.com Barry Demchak -- from my mobile phone On Jul 18,

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load data from sql for cytoscape.js

forwarded to cytoscape...@googlegroups.com Barry Demchak -- from my mobile phone On Jul 18,

7/18/16

tbh...@uic.edu, … Matthias König3

7/18/16

Loading the Data before rendering the graph

This sounds a lot like Cytoscape groups to me. see http://chianti.ucsd.edu/cytoscape-3.4.0/API/org/

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Loading the Data before rendering the graph

This sounds a lot like Cytoscape groups to me. see http://chianti.ucsd.edu/cytoscape-3.4.0/API/org/

7/18/16

Mat, … Neels11

7/15/16

Analyzing large networks in Cytoscape

@Scooter Morris Hi. I am using Cytoscape 3.4 on a Dell Tower workstation with 256 GB RAM. My

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Analyzing large networks in Cytoscape

@Scooter Morris Hi. I am using Cytoscape 3.4 on a Dell Tower workstation with 256 GB RAM. My

7/15/16

Thomas Pfau, Alexander Pico3

7/14/16

Service Listener not being informed of Service changes

Ah, we missed this one too! We only have a simple screening process that looks for threads with no

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Service Listener not being informed of Service changes

Ah, we missed this one too! We only have a simple screening process that looks for threads with no

7/14/16

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