Core Hunter Users

Contact owners and managers

1–21 of 21

Welcome to the user group for the Core Hunter software.

Please join to keep up to date with Core Hunter releases and ask for help.

Core Hunter can be downloaded from the Core Hunter website

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Sharmila Murugesan, Herman De Beukelaer2

Mar 21

Phenotypic data

Hi, Yes you can use Core Hunter based on phenotypic data only. Any of the distance-based metrics (E-

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Phenotypic data

Hi, Yes you can use Core Hunter based on phenotypic data only. Any of the distance-based metrics (E-

Mar 21

Fuchuan Han, Herman De Beukelaer2

Mar 20

Can objects generated by genotypes be saved locally?

Hi, Serialising with saveRDS won't work out of the box because the core hunter data object

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Can objects generated by genotypes be saved locally?

Hi, Serialising with saveRDS won't work out of the box because the core hunter data object

Mar 20

Jeevan Dananjaya

3/19/22

help me to solve the error

Dear Sir/Madam, I tried to run sample program of Corehunter package in R program but I have following

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help me to solve the error

Dear Sir/Madam, I tried to run sample program of Corehunter package in R program but I have following

3/19/22

Avni Mann

3/15/22

Export selected Dataset

Hello. I am working on a distance matrix of about 300 accessions and have to select a subset of this

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Export selected Dataset

Hello. I am working on a distance matrix of about 300 accessions and have to select a subset of this

3/15/22

Siou Ting Gan

4/26/21

Calculation of EN, AN, EE, SH and He value

Dear all, I am working on genotypic data of 186 lines with 107 SSR markers and am testing various

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Calculation of EN, AN, EE, SH and He value

Dear all, I am working on genotypic data of 186 lines with 107 SSR markers and am testing various

4/26/21

bleckie, daveneti3

7/24/20

Q&A

Converting genotype data

Hi Guy, Tassel will output in a variety of formats including Hapmap, Hapmap Diploid, HDF5, VCF, and

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Q&A

Converting genotype data

Hi Guy, Tassel will output in a variety of formats including Hapmap, Hapmap Diploid, HDF5, VCF, and

7/24/20

subhadra chakrabarty

2/21/20

Q&A

input file error

hello, I am trying to make a coreset from a data set containing 28k+ markers and ~3500 lines. i have

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Q&A

input file error

hello, I am trying to make a coreset from a data set containing 28k+ markers and ~3500 lines. i have

2/21/20

Laxman Adhikari

12/9/19

Q&A

how-to-interpret-result

Hi, I ran CorenHunter in terminal using R scripts. I only used marker matrix data. I got 41 core set

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Q&A

how-to-interpret-result

Hi, I ran CorenHunter in terminal using R scripts. I only used marker matrix data. I got 41 core set

12/9/19

Hung-Wei Chen, daveneti2

12/6/19

Q&A

The "always.selected" parameter problem

For anyone following this post please see https://github.com/corehunter/corehunter3/issues/108 for

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Q&A

The "always.selected" parameter problem

For anyone following this post please see https://github.com/corehunter/corehunter3/issues/108 for

12/6/19

Gajanan Saykhedkar, daveneti4

9/15/19

How to calculate only Modified rogers matrix for 391 genotypes with 1892 markers and export it in csv format?

Sorry for the late reply. Have you tried https://cran.r-project.org/web/packages/poppr/poppr.pdf Guy

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How to calculate only Modified rogers matrix for 391 genotypes with 1892 markers and export it in csv format?

Sorry for the late reply. Have you tried https://cran.r-project.org/web/packages/poppr/poppr.pdf Guy

9/15/19

Carmen Leida, Herman De Beukelaer2

12/10/18

Q&A

phenotype file for R corehunter USERS

Hi Carmen, Can you send us an example of the file you are trying to read? Thanks Herman

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Q&A

phenotype file for R corehunter USERS

Hi Carmen, Can you send us an example of the file you are trying to read? Thanks Herman

12/10/18

ljb...@cornell.edu

10/8/18

Q&A

extracting metrics from corehunter desktop version

Hi, I installed and am using the Corehunter 3 desktop version, and wondering how I can extract

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Q&A

extracting metrics from corehunter desktop version

Hi, I installed and am using the Corehunter 3 desktop version, and wondering how I can extract

10/8/18

Luzie Ursula Wingen, Herman De Beukelaer3

4/18/18

Q&A

problems with install in R on Linux with openjdk-9

Hi all, We have deployed an update of Core Hunter, version 3.2.1, to CRAN. It should fix install

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Q&A

problems with install in R on Linux with openjdk-9

Hi all, We have deployed an update of Core Hunter, version 3.2.1, to CRAN. It should fix install

4/18/18

Pietro Delfino, Herman De Beukelaer7

8/10/17

Q&A

Sample Core Using Both Genotypes and Phenotypes

Hi Pietro, Turns out I was right: there was a bug in our code when reading phenotype data with a

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Q&A

Sample Core Using Both Genotypes and Phenotypes

Hi Pietro, Turns out I was right: there was a bug in our code when reading phenotype data with a

8/10/17

Scott Lee, … jframi6

7/17/17

Previously sequenced lines

Hi Herman Thanks for your reply, While getting the information to reply to you, I figured out that my

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Previously sequenced lines

Hi Herman Thanks for your reply, While getting the information to reply to you, I figured out that my

7/17/17

daveneti

3/12/17

Looking for Alpha testers for the Core Hunter desktop verson

Hi, Would anyone be interested in Alpha testing the graphical user interface version of Core Hunter?

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Looking for Alpha testers for the Core Hunter desktop verson

Hi, Would anyone be interested in Alpha testing the graphical user interface version of Core Hunter?

3/12/17

Pietro Delfino, Herman De Beukelaer3

3/3/17

Core Hunter 3 documentation

Thanks a lot, very clear! Pietro Il giorno giovedì 2 marzo 2017 10:36:46 UTC+1, Herman De Beukelaer

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Core Hunter 3 documentation

Thanks a lot, very clear! Pietro Il giorno giovedì 2 marzo 2017 10:36:46 UTC+1, Herman De Beukelaer

3/3/17

Herman De Beukelaer

12/7/16

Core Hunter 3 released

Dear users, We are happy to announce that Core Hunter version 3 has been released, which was recoded

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Core Hunter 3 released

Dear users, We are happy to announce that Core Hunter version 3 has been released, which was recoded

12/7/16

eating kuo, Herman De Beukelaer2

3/24/16

Core hunter in binary SNP data

Hi, What Core Hunter and Core Analyzer calculate as HE is the expected proportion of heterozygous

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Core hunter in binary SNP data

Hi, What Core Hunter and Core Analyzer calculate as HE is the expected proportion of heterozygous

3/24/16

Cropinformatics

2/12/13

Announcement

www.corehunter.org web site down time

http://www.corehunter.org was down for the last few days. Everything should be working now, if you

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Announcement

www.corehunter.org web site down time

http://www.corehunter.org was down for the last few days. Everything should be working now, if you

2/12/13

daveneti

2/12/13

Announcement

Core Hunter Graphical User Interface

We hope to release soon a simple Graphical User Interface Core Hunter Interface. Please watch this

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Announcement

Core Hunter Graphical User Interface

We hope to release soon a simple Graphical User Interface Core Hunter Interface. Please watch this

2/12/13