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Oliver Fleetwood
,
Peter Kasson
3
7/26/17
String-of-swarms tutorial not working
Hi Peter, I tried the string-of-swarms method with your forked version of copernicus and it still did
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String-of-swarms tutorial not working
Hi Peter, I tried the string-of-swarms method with your forked version of copernicus and it still did
7/26/17
Iman Pouya
,
Abhirath Batra
2
8/1/16
Re: Plumed Module
Hi Iman. I was able to solve the problem. It seems that there was an issue with the plumed file
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Re: Plumed Module
Hi Iman. I was able to solve the problem. It seems that there was an issue with the plumed file
8/1/16
Abhirath Batra
8/1/16
Restarting instances
Hi I have written a module that requires to spawn new simulations after intervals. Right now, I'm
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Restarting instances
Hi I have written a module that requires to spawn new simulations after intervals. Right now, I'm
8/1/16
Abhirath Batra
,
Iman Pouya
3
8/1/16
Subnet input/output
Hi! Yes it does make sense. Thanks! I was able to use subnet inputs in a module that I'm writing
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Subnet input/output
Hi! Yes it does make sense. Thanks! I was able to use subnet inputs in a module that I'm writing
8/1/16
Kalev
,
Iman Pouya
6
6/28/16
How to start multiple servers on cluster?
Hi Iman, thank you for your reply. I don't even get as far as adding servers, I get stuck at the
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How to start multiple servers on cluster?
Hi Iman, thank you for your reply. I don't even get as far as adding servers, I get stuck at the
6/28/16
Abhirath Batra
,
Iman Pouya
6
6/22/16
Current directory
Thanks for the feedback Abirath. This seems to have gone by unnoticed. We will check it through and
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Current directory
Thanks for the feedback Abirath. This seems to have gone by unnoticed. We will check it through and
6/22/16
Abhirath Batra
, …
Peter Kasson
11
5/11/16
Failed to create new directory error
I see. I initially used the latest GitHub repo itself. Thank you! On Wednesday, May 11, 2016 at 10:02
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Failed to create new directory error
I see. I initially used the latest GitHub repo itself. Thank you! On Wednesday, May 11, 2016 at 10:02
5/11/16
Kalev
12/18/15
Poor convergence of free energy results
Hi list, I've been experimenting with free energy workflow and I found that results of repeated
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Poor convergence of free energy results
Hi list, I've been experimenting with free energy workflow and I found that results of repeated
12/18/15
Kalev
12/8/15
How to get results at the end of the job automatically?
Hi, In tutorials at the end of any gromacs workflow, the user has to manually check the results. Is
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How to get results at the end of the job automatically?
Hi, In tutorials at the end of any gromacs workflow, the user has to manually check the results. Is
12/8/15
Kalev
,
Iman Pouya
4
12/7/15
Choosing gromacs version
On Monday, December 7, 2015 at 4:32:47 PM UTC+2, Kalev wrote: Hi Iman, Thank you for the answer. I
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Choosing gromacs version
On Monday, December 7, 2015 at 4:32:47 PM UTC+2, Kalev wrote: Hi Iman, Thank you for the answer. I
12/7/15
Kalev
,
Peter Kasson
2
11/23/15
Choosing active project
cpcc set-default (in general, cpcc help gives you a nice listing) On Mon, Nov 23, 2015 at 4:54 AM
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Choosing active project
cpcc set-default (in general, cpcc help gives you a nice listing) On Mon, Nov 23, 2015 at 4:54 AM
11/23/15
Liaoran Cao
,
Peter Kasson
3
11/19/15
Python error when running the test
By reading this script It looks like the only tpr used in this script is tesst/lib/swarms/swarm/topol
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Python error when running the test
By reading this script It looks like the only tpr used in this script is tesst/lib/swarms/swarm/topol
11/19/15
Lee-Ping Wang
, …
Florian
8
2/18/15
Error message when running the tutorial scripts
Ok scratch my last post, I have no idea why but now it is working ... might have been some settings
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Error message when running the tutorial scripts
Ok scratch my last post, I have no idea why but now it is working ... might have been some settings
2/18/15
Markus Rampp
,
Iman Pouya
2
1/15/14
copernicus 2.0 beta and gromacs/4.6
Hi Markus. The error you see there comes from mdrun. It looks like you have compiled mdrun without
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copernicus 2.0 beta and gromacs/4.6
Hi Markus. The error you see there comes from mdrun. It looks like you have compiled mdrun without
1/15/14
Danny Shemesh
,
Iman
2
9/30/13
Can't get copernicus to parllellize a job between multiple endpoints ?
Hi Danny So Copernicus is built as a platform to run problem sets suitable for distributed computing.
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Can't get copernicus to parllellize a job between multiple endpoints ?
Hi Danny So Copernicus is built as a platform to run problem sets suitable for distributed computing.
9/30/13
Thomas Bouissou
, …
Sander Pronk
9
11/15/12
Memory laek problem?
On 15 Nov 2012, at 14:59 , Thomas Bouissou <tbou...@gmail.com> wrote: Ok thank you very much,
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Memory laek problem?
On 15 Nov 2012, at 14:59 , Thomas Bouissou <tbou...@gmail.com> wrote: Ok thank you very much,
11/15/12
Thomas Bouissou
, …
Sander Pronk
13
10/22/12
msm-test
Excellent! I'll try to take a look at a dual-compatible version later this week Sander On Oct 22,
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msm-test
Excellent! I'll try to take a look at a dual-compatible version later this week Sander On Oct 22,
10/22/12
Thomas Bouissou
,
Iman Pouya
4
10/12/12
Multi-User configuration
Thats still under discussion. We will put out information regarding this as soon as a decision is
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Multi-User configuration
Thats still under discussion. We will put out information regarding this as soon as a decision is
10/12/12
Thomas Bouissou
8/27/12
SSL error
Hello, I try to run a worker on a machine where there is no server running. I start a server on host
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SSL error
Hello, I try to run a worker on a machine where there is no server running. I start a server on host
8/27/12
Thomas Bouissou
,
Sander Pronk
4
8/23/12
Use Copernicus with SGE
It looks like your home directory is not accessible on the cluster nodes. You can set either the
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Use Copernicus with SGE
It looks like your home directory is not accessible on the cluster nodes. You can set either the
8/23/12
Peter Kasson
8/8/12
Re: How to use Copernicus
Hello, It may not be well documented, but Gromacs binaries should be in the user's path. I have
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Re: How to use Copernicus
Hello, It may not be well documented, but Gromacs binaries should be in the user's path. I have
8/8/12
Christopher Ing
, …
Sander Pronk
4
6/14/12
Release Schedule
Hello Sander and Iman, I was hoping to see one of you at this years Biophysical Society Meeting but I
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Release Schedule
Hello Sander and Iman, I was hoping to see one of you at this years Biophysical Society Meeting but I
6/14/12
Peter Kasson
,
Iman Pouya
3
2/10/12
Re: Copernicus?
Couple of points to help out with the troubleshooting 1. Did you start the server in debug mode? you
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Re: Copernicus?
Couple of points to help out with the troubleshooting 1. Did you start the server in debug mode? you
2/10/12
Chris
,
Sander Pronk
3
1/5/12
Is a Copernicus Server Fault Tolerant
> What is not implemented yet, though, is what the project server should do if a server with
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Is a Copernicus Server Fault Tolerant
> What is not implemented yet, though, is what the project server should do if a server with
1/5/12
Chris
,
Sander Pronk
3
1/5/12
Adding Customized Worker Coupling
> 1. If the exchange steps happen infrequently enough (ie with intervals more than a few seconds
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Adding Customized Worker Coupling
> 1. If the exchange steps happen infrequently enough (ie with intervals more than a few seconds
1/5/12
Chris
,
Sander Pronk
4
1/5/12
Adding New MD Package Support
It was explicitly set up to make that easy - it's one of the reasons why everything is formulated
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Adding New MD Package Support
It was explicitly set up to make that easy - it's one of the reasons why everything is formulated
1/5/12
Benjamin Trendelkamp-Schroer
,
Iman Pouya
2
1/5/12
Starting copernicus server
This happens when the the copernicus server is already in use the default copernicus ports that are
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Starting copernicus server
This happens when the the copernicus server is already in use the default copernicus ports that are
1/5/12
Chris
,
Sander Pronk
2
1/4/12
Development Build Access
Oops, that was a misconfiguration. Thanks for letting us know! Sander On Jan 3, 2012, at 21:35 ,
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Development Build Access
Oops, that was a misconfiguration. Thanks for letting us know! Sander On Jan 3, 2012, at 21:35 ,
1/4/12
Iman Pouya
11/17/11
Welcome
Hi Feel free to ask anything about the copernicus computing platform.
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Welcome
Hi Feel free to ask anything about the copernicus computing platform.
11/17/11