COMBINE archive

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The COMBINE archive group provides a forum to discuss the OMEX format, the structure of the COMBINE archive, implementation issues, and all related questions. For more information about the COMBINE archive, please see the OMEX page on the COMBINE site.

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David Nickerson2

3/29/23

HARMONY 2023 - registration now open!

Hi all, Just a reminder of the upcoming deadlines to submit abstracts and breakouts for HARMONY 2023

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HARMONY 2023 - registration now open!

Hi all, Just a reminder of the upcoming deadlines to submit abstracts and breakouts for HARMONY 2023

3/29/23

David Nickerson

2/15/23

Invitation to hackathons on FAIR model indicators (Feb 17-Mar 3)

Dear all, Some of you might remember the Workshop on FAIR indicators that we ran in Berlin 2022

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Invitation to hackathons on FAIR model indicators (Feb 17-Mar 3)

Dear all, Some of you might remember the Workshop on FAIR indicators that we ran in Berlin 2022

2/15/23

David Nickerson

9/14/22

Fwd: COMBINE 2022 registration reminder and abstract submission for posters still open

Hi all, COMBINE 2022 is being held Oct 6-8 at Humboldt University of Berlin, Philippstraße 13, Haus

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Fwd: COMBINE 2022 registration reminder and abstract submission for posters still open

Hi all, COMBINE 2022 is being held Oct 6-8 at Humboldt University of Berlin, Philippstraße 13, Haus

9/14/22

David Nickerson

8/26/22

Fwd: COMBINE 2022 and ICSB - abstract submission deadline extended, preliminary program available

Hi all, To bring COMBINE 2022 (https://combine-org.github.io/events/) into alignment with the

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Fwd: COMBINE 2022 and ICSB - abstract submission deadline extended, preliminary program available

Hi all, To bring COMBINE 2022 (https://combine-org.github.io/events/) into alignment with the

8/26/22

David Nickerson

7/18/22

COMBINE 2022 in Berlin this October

Hi all, The plans for COMBINE 2022 are coming together. You can find details here: https://combine-

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COMBINE 2022 in Berlin this October

Hi all, The plans for COMBINE 2022 are coming together. You can find details here: https://combine-

7/18/22

David Nickerson

7/22/21

Hi all, COMBINE 2021 will be virtual again this year and held October 11th to 15th. The format will

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Hi all, COMBINE 2021 will be virtual again this year and held October 11th to 15th. The format will

7/22/21

David Nickerson

9/1/20

COMBINE 2020 - deadline extended to September 8

Hi all, The deadline for registration, abstracts, and breakouts for COMBINE 2020 has been extended

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COMBINE 2020 - deadline extended to September 8

Hi all, The deadline for registration, abstracts, and breakouts for COMBINE 2020 has been extended

9/1/20

Dagmar Waltemath

8/4/20

COMBINE 2020: Registration open; Call for abstracts, breakouts and tutorials

Dear COMBINE community, The "Computational Modeling in Biology" Network (COMBINE) is an

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COMBINE 2020: Registration open; Call for abstracts, breakouts and tutorials

Dear COMBINE community, The "Computational Modeling in Biology" Network (COMBINE) is an

8/4/20

Stian Soiland-Reyes

7/4/19

[CfP] Workshop on Research Objects at IEEE eScience 2019 (final call)

Apologies for cross-posting. # Final Call for Papers Workshop on Research Objects (RO2019) 24 Sept

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[CfP] Workshop on Research Objects at IEEE eScience 2019 (final call)

Apologies for cross-posting. # Final Call for Papers Workshop on Research Objects (RO2019) 24 Sept

7/4/19

Stian Soiland-Reyes

6/21/19

[CfP] Workshop on Research Objects at IEEE eScience 2019 (extended deadlines)

Apologies for cross-posting. # Call for Papers Workshop on Research Objects (RO2019) 24 Sept 2019 at

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[CfP] Workshop on Research Objects at IEEE eScience 2019 (extended deadlines)

Apologies for cross-posting. # Call for Papers Workshop on Research Objects (RO2019) 24 Sept 2019 at

6/21/19

Stian Soiland-Reyes2

6/7/19

[CfP] Workshop on Research Objects (RO2019)

Apologies for crossposting. Workshop on Research Objects (RO2019) 2019-09-24 at IEEE eScience 2019,

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[CfP] Workshop on Research Objects (RO2019)

Apologies for crossposting. Workshop on Research Objects (RO2019) 2019-09-24 at IEEE eScience 2019,

6/7/19

Cooper, Jonathan

5/31/18

Registration for HARMONY 2018 closes 3rd June

Dear all, Just a reminder that this coming Sunday is the last day you can register for HARMONY in

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Registration for HARMONY 2018 closes 3rd June

Dear all, Just a reminder that this coming Sunday is the last day you can register for HARMONY in

5/31/18

Cooper, Jonathan2

5/8/18

Registration open for HARMONY 2018

Dear all, The early bird registration deadline is the end of this coming Friday (UK time) – please do

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Registration open for HARMONY 2018

Dear all, The early bird registration deadline is the end of this coming Friday (UK time) – please do

5/8/18

Stian Soiland-Reyes

4/19/18

[CfP] RO2018: Workshop on Research Objects, Amsterdam

Apologies for cross-posting. # Workshop on Research Objects (RO2018) 2018-10-29 at IEEE eScience 2018

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[CfP] RO2018: Workshop on Research Objects, Amsterdam

Apologies for cross-posting. # Workshop on Research Objects (RO2018) 2018-10-29 at IEEE eScience 2018

4/19/18

Jonathan Cooper, … Cooper, Jonathan5

2/5/18

Python libraries for working with COMBINE archives

Thanks all for the feedback. We're going to start with libCombine, although we may build

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Python libraries for working with COMBINE archives

Thanks all for the feedback. We're going to start with libCombine, although we may build

2/5/18

David Nickerson

6/16/17

Fwd: COMBINE archive HARMONY discussion

---------- Forwarded message ---------- From: David Nickerson <david.n...@gmail.com> Date:

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Fwd: COMBINE archive HARMONY discussion

---------- Forwarded message ---------- From: David Nickerson <david.n...@gmail.com> Date:

6/16/17

Frank T. Bergmann

9/16/16

Initial release of a C++ library supporting the Combine Archive

Dear all, Today I want to announce the availability of a library supporting the Combine Archive

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Initial release of a C++ library supporting the Combine Archive

Dear all, Today I want to announce the availability of a library supporting the Combine Archive

9/16/16

Matthias König, Nicolas Le Novere3

3/10/16

None of the http://purl.org/NET/mediatypes/ uris resolves & list of combine.specifications ids

Thanks Nicolas, this helps a lot. Exactly what I was looking for. On Thursday, 10 March 2016 15:59:49

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None of the http://purl.org/NET/mediatypes/ uris resolves & list of combine.specifications ids

Thanks Nicolas, this helps a lot. Exactly what I was looking for. On Thursday, 10 March 2016 15:59:49

3/10/16

Alan Garny, … Nicolas Le Novere5

9/23/15

COMBINE Archive API?

Hi Nicolas, > Indeed there are no "official API", but there are several APIs, already

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COMBINE Archive API?

Hi Nicolas, > Indeed there are no "official API", but there are several APIs, already

9/23/15

Martin Scharm, … Jonathan Cooper9

9/7/15

Advertising the COMBINE archive

Looks nice to me! On 03/09/2015 17:14, Nicolas Le Novere wrote: > What about the attached? >

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Advertising the COMBINE archive

Looks nice to me! On 03/09/2015 17:14, Nicolas Le Novere wrote: > What about the attached? >

9/7/15

Nicolas Le Novere

8/6/15

Another tool using the archive: mimoza

Hello group, The mimoza tool developed in Bordeaux, allows multilevel graphical representation of a

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Another tool using the archive: mimoza

Hello group, The mimoza tool developed in Bordeaux, allows multilevel graphical representation of a

8/6/15

Martin Scharm, David Nickerson2

6/21/15

All Singing All Dancing

Hi Martin, I was hoping to have time to give some more detailed feedback, but I haven't - so I

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All Singing All Dancing

Hi Martin, I was hoping to have time to give some more detailed feedback, but I haven't - so I

6/21/15

Nicolas Le Novere, … Stian Soiland-Reyes10

9/23/14

value of the attribute format for formats without URI of Internet Media Type

I would suggest to add wording to use http://purl.org/NET/mediatypes/application/octet-stream if the

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value of the attribute format for formats without URI of Internet Media Type

I would suggest to add wording to use http://purl.org/NET/mediatypes/application/octet-stream if the

9/23/14

Nicolas Rodriguez

9/22/14

OMEX Version 1 (final)

We are pleased to announce the release of the final specification for OMEX Version 1. It is available

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OMEX Version 1 (final)

We are pleased to announce the release of the final specification for OMEX Version 1. It is available

9/22/14

Florent Yvon, … Stian Soiland-Reyes5

9/15/14

Relationship between files in the manifest

(Did you mean to CC the list..? Hope it's OK if I add it..) On 15 September 2014 12:42, <n.

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Relationship between files in the manifest

(Did you mean to CC the list..? Hope it's OK if I add it..) On 15 September 2014 12:42, <n.

9/15/14

Nicolas Le Novere

7/25/14

OMEX Second release candidate

Hello, The second draft of the format used to encode the COMBINE archive, OMEX, is available at: http

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OMEX Second release candidate

Hello, The second draft of the format used to encode the COMBINE archive, OMEX, is available at: http

7/25/14

Nicolas Le Novere, Felix Winter3

7/10/14

OMEX release candidate 1

Hi everyone, I just read the current Release Candidate of the COMBINE archive specification. If I

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OMEX release candidate 1

Hi everyone, I just read the current Release Candidate of the COMBINE archive specification. If I

7/10/14

Stian Soiland-Reyes, … Frank Bergmann5

6/16/14

XML Schema for manifest.xml

I think the schema looks fine as it is. Indeed it won't help much for validation as the devil is

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XML Schema for manifest.xml

I think the schema looks fine as it is. Indeed it won't help much for validation as the devil is

6/16/14

Nicolas Rodriguez, … Stian Soiland-Reyes8

6/11/14

master attribute unique or not

On 10 June 2014 22:01, Camille Laibe <la...@ebi.ac.uk> wrote: > That could include a

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master attribute unique or not

On 10 June 2014 22:01, Camille Laibe <la...@ebi.ac.uk> wrote: > That could include a

6/11/14

Nicolas Le Novere, … Camille Laibe10

5/6/14

specifying the type of format declaration

Dear Stian, > (rest of email is about identifiers.org) Thank you for the report about Identifiers.

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specifying the type of format declaration

Dear Stian, > (rest of email is about identifiers.org) Thank you for the report about Identifiers.

5/6/14

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