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Chris Gorgolewski
,
Satrajit Ghosh
2
8/29/18
BIDS Collection at F1000Research
+1 for F1000Research - thanks chris for coordinating this. cheers, satra On Wed, Aug 29, 2018 at 12:
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BIDS Collection at F1000Research
+1 for F1000Research - thanks chris for coordinating this. cheers, satra On Wed, Aug 29, 2018 at 12:
8/29/18
Daniele Marinazzo
,
Chris Gorgolewski
4
7/31/18
Parallelization: yes or not?
We are going through some deep refactor now but 2 and 3 were supported. Best, Chris PS Apologies for
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Parallelization: yes or not?
We are going through some deep refactor now but 2 and 3 were supported. Best, Chris PS Apologies for
7/31/18
Chris Gorgolewski
2
7/31/18
Re: [bids-discussion] Elevated permissions in BIDS Apps?!
Relying on root when building the containers (in Dockerfiles) is perfectly ok (actually I cannot
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Re: [bids-discussion] Elevated permissions in BIDS Apps?!
Relying on root when building the containers (in Dockerfiles) is perfectly ok (actually I cannot
7/31/18
Daniele Marinazzo
,
Chris Gorgolewski
2
7/29/18
group/condition analysis - to include in new BIDS app or not?
Hi Daniele, Sorry for the late reply. I see the appeal of being able to do AZ analysis with one tool,
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group/condition analysis - to include in new BIDS app or not?
Hi Daniele, Sorry for the late reply. I see the appeal of being able to do AZ analysis with one tool,
7/29/18
Chris Gorgolewski
7/7/18
Learning which data derivatives matter most
Dear all, To learn which neuroimaging data derivatives (intermediate or final analysis outputs)
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Learning which data derivatives matter most
Dear all, To learn which neuroimaging data derivatives (intermediate or final analysis outputs)
7/7/18
Chris Gorgolewski
7/2/18
Re: [bids-discussion] Wrap my BIDS App?
Hi Sajjad, I don't think you need two different apps for this. You can store the split files in
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Re: [bids-discussion] Wrap my BIDS App?
Hi Sajjad, I don't think you need two different apps for this. You can store the split files in
7/2/18
Daniele Marinazzo
,
Chris Gorgolewski
2
5/13/18
options for an app which works on preprocessed data
I don't think there is anything in BIDS Derivatives that goes into this level of details in a
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options for an app which works on preprocessed data
I don't think there is anything in BIDS Derivatives that goes into this level of details in a
5/13/18
Chris Gorgolewski
1/19/18
Webpage update
I have updated http://bids-apps.neuroimaging.io/ so it can lists BIDS Apps hosted outside of the BIDS
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Webpage update
I have updated http://bids-apps.neuroimaging.io/ so it can lists BIDS Apps hosted outside of the BIDS
1/19/18
gki...@gmail.com
,
Chris Gorgolewski
2
1/11/18
Separating the validation of BIDS datasets from BIDS apps
+1 This already has been requested. Definitely good to add this option. Best, Chris On Mon, Jan 8,
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Separating the validation of BIDS datasets from BIDS apps
+1 This already has been requested. Definitely good to add this option. Best, Chris On Mon, Jan 8,
1/11/18
paola.o...@yale.edu
, …
odrio...@gmail.com
3
11/17/17
Q&A
HCP pipelines "final" functional output files
Thank you so much, Eric! You're right, I have now posted this question there too and will link to
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Q&A
HCP pipelines "final" functional output files
Thank you so much, Eric! You're right, I have now posted this question there too and will link to
11/17/17
Chris Gorgolewski
11/1/17
pybids 0.4.0
Dear all, Happy to announce pybids 0.4.0 has been released: https://github.com/INCF/pybids/releases/
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pybids 0.4.0
Dear all, Happy to announce pybids 0.4.0 has been released: https://github.com/INCF/pybids/releases/
11/1/17
Chris Gorgolewski
10/23/17
[job] Program Manager for the Brain Imaging Data Structure project
Do you have great people skills and enjoy organizing events? Are you interested in helping
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[job] Program Manager for the Brain Imaging Data Structure project
Do you have great people skills and enjoy organizing events? Are you interested in helping
10/23/17
vann...@gmail.com
10/20/17
Action Required : Infosys Application
Dear Bro/Sis please take a look on below URL and Respond by applying Hot Openings https://
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Action Required : Infosys Application
Dear Bro/Sis please take a look on below URL and Respond by applying Hot Openings https://
10/20/17
Chris Markiewicz
, …
eric...@gmail.com
4
9/11/17
Run parameterization
Chris M, et al, Good point. I retract my "--app-label" suggestion and instead suggest
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Run parameterization
Chris M, et al, Good point. I retract my "--app-label" suggestion and instead suggest
9/11/17
Chris Gorgolewski
, …
Ali Khan
3
8/30/17
Support of parallelization across sessions
Are there existing or in-the-works BIDS-App-wide standards to support parallelization (subject or
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Support of parallelization across sessions
Are there existing or in-the-works BIDS-App-wide standards to support parallelization (subject or
8/30/17
Chris Gorgolewski
8/24/17
File upload job inputs now supported on OpenNeuro
Dear all, OpenNeuro now supports uploading custom files during job submission process. This can be
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File upload job inputs now supported on OpenNeuro
Dear all, OpenNeuro now supports uploading custom files during job submission process. This can be
8/24/17
Chris Gorgolewski
8/4/17
OpenNeuro badge
Dear all, If your app is available on OpenNeuro you can now advertise it with our new badge: http://
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OpenNeuro badge
Dear all, If your app is available on OpenNeuro you can now advertise it with our new badge: http://
8/4/17
Chris Gorgolewski
7/18/17
BIDS 1.0.2 release
Dear all, We have a new minor release. Here's the changelog: Added support for high resolution (
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BIDS 1.0.2 release
Dear all, We have a new minor release. Here's the changelog: Added support for high resolution (
7/18/17
Chris Gorgolewski
, …
paola.o...@yale.edu
13
6/30/17
HCP Pipelines BIDS App
On Fri, Jun 30, 2017 at 2:52 PM, <paola.o...@yale.edu> wrote: Hi Chris, Thank you so much!
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HCP Pipelines BIDS App
On Fri, Jun 30, 2017 at 2:52 PM, <paola.o...@yale.edu> wrote: Hi Chris, Thank you so much!
6/30/17
Chris Gorgolewski
6/4/17
BIDS Apps deployment on OpenNeuro
Dear BIDS Apps developers, Over the past year we have been working hard preparing a free science as a
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BIDS Apps deployment on OpenNeuro
Dear BIDS Apps developers, Over the past year we have been working hard preparing a free science as a
6/4/17
Chris Gorgolewski
4/16/17
BIDS Coding Sprint
Dear all, Stanford Center for Reproducible Neuroscience is proud to announce an open call for
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BIDS Coding Sprint
Dear all, Stanford Center for Reproducible Neuroscience is proud to announce an open call for
4/16/17
Chris Gorgolewski
, …
Guillaume Flandin
3
3/27/17
Hyphens vs underscores
Hi, I also prefer hyphens. This topic was already mentioned last year: https://groups.google.com/
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Hyphens vs underscores
Hi, I also prefer hyphens. This topic was already mentioned last year: https://groups.google.com/
3/27/17
Chris Gorgolewski
3/14/17
Re: [bids-discussion] bids-apps - file permissions of produced artifacts
Hi, To clarify - you are talking about running BIDS Apps with Docker right? You can override the
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Re: [bids-discussion] bids-apps - file permissions of produced artifacts
Hi, To clarify - you are talking about running BIDS Apps with Docker right? You can override the
3/14/17
Chris Gorgolewski
3/13/17
BIDS 1.0.1 release
Dear all, After a rather lengthy Release Candidate period I have released version 1.0.1 final that
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BIDS 1.0.1 release
Dear all, After a rather lengthy Release Candidate period I have released version 1.0.1 final that
3/13/17
Chris Gorgolewski
,
Fidel Alfaro Almagro
2
3/8/17
Call for Papers: Docker Containers for Reproducible Research Workshop (C4RR) | Software Sustainability Institute
Really bad dates. It takes place during OHBM (27th to 28th June 2017) Not that I am the biggest
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Call for Papers: Docker Containers for Reproducible Research Workshop (C4RR) | Software Sustainability Institute
Really bad dates. It takes place during OHBM (27th to 28th June 2017) Not that I am the biggest
3/8/17
Chris Gorgolewski
1/13/17
New kid on the block - tracula
There is a new BIDS App in the making - Franz Liem started working on wrapping FreeSurfers tracula
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New kid on the block - tracula
There is a new BIDS App in the making - Franz Liem started working on wrapping FreeSurfers tracula
1/13/17
Guillaume Flandin
, …
Chris Gorgolewski
7
12/22/16
Optional arguments in BIDS-Apps
Happy to go with gb instead of mb of that's the consensus. There are not that many apps to change
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Optional arguments in BIDS-Apps
Happy to go with gb instead of mb of that's the consensus. There are not that many apps to change
12/22/16
Chris Gorgolewski
3
10/1/16
googledrive.com interruptions
This: https://support.google.com/drive/answer/2881970?hl=en explains the google drive "outage
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googledrive.com interruptions
This: https://support.google.com/drive/answer/2881970?hl=en explains the google drive "outage
10/1/16
Chris Gorgolewski
9/20/16
Problems with --read-only on CircleCI
Dear all, We recently discovered a bug in Docker implementation used on CircleCI: the --read-only
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Problems with --read-only on CircleCI
Dear all, We recently discovered a bug in Docker implementation used on CircleCI: the --read-only
9/20/16
Chris Gorgolewski
9/19/16
Guide to versioning BIDS Apps
I realized that versioning of BIDS Apps is an important topic so I decided to write a little guide
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Guide to versioning BIDS Apps
I realized that versioning of BIDS Apps is an important topic so I decided to write a little guide
9/19/16