beast-users

Dear Tim I want to know how to resume the analyze in Beast2,Could you sent me the relation the

Applications are now closed. We have a few places left so late applications will be considered on a

This is the final call for Taming the BEAST in the South Pacific, a 5-day summer short course on

I checked the log files. Assuming I run the same XML file twice, with MCMC set to 10000 and sampling

Thank you for your message! I am out of office and will be back on 7 January. Best greetings, Karin

Hello, Are there any plans to include a conda install of BEAST v2.7.7. We are having a lot of

Hello all, I am attempting to run a path sampling analysis using the Model Selection package in

Hi BEAST users community, I'm posting here for future users of StarBEAST2 who wish to fix the

It is likely that you should use 1-4 GPUs to get great speedup for your data set. For BEAST or BEASTX

The downside to choosing one model (via ML or by intuition) is that you are ignoring uncertainty

Hi BEAST users! I have been trying to build and date my species tree by following this tutorial:

Dear BEAST2ers Is there an example xml or documentation for fixing sampling proportion to 0 before

Hi BEAST users. I am trying to build a species tree and date it based on this tutorial: https://

Hello everyone, I'm using BEAST v2.7.8 with the Contraband v1.0.2 and Model Selection v1.6.2

Hi BEAST users, I came across this thread while trying to fix the species tree topology in a

Dear Experts, I have estimated the trajectory distributions of reproductive numbers of three

Hello, When I combine all 4 of my log files for each chain I ran, and then try to add the combined

Hi! I'm trying to set ucldmean priors for the genes in my analysis, and all of them work, except

Dear all, I am trying to use BEAST to experiment with humanistic data. I have converted this data

Hey, I am trying to create a Coalescent Bayesian Skyline plot for my samples, which consists of

I am trying to use the last version of Beast v10.5.0, Beagle v3.1.0, and for Java Eclipse Temurin JDK

Thank you, Jordan. That was exactly was I suspected but I wanted to have an authorized confirmation.

Hello, I have an issue while trying to run MASCOT v3.0.7 ( See error below). The analysis works in

Thank you, Remco, that was exactly the problem. On Monday, June 9, 2025 at 2:59:52 AM UTC-3 higg...@

Hello Sara, Did you manage to answer the question? I have a similar problem :) Thank you! El martes,

Hi Beast Community, Is there anybody who could set-up a log-normal prior in real space for ucld.mean

My bad - the group count is the number of epochs in the Yule skyline model, as detailed below. This

Hi Jie, I see you've also opened an issue on the EpiInf repository. Seeing as this is related

The MCMC setup in beauti 2.7.2. There is red warning. Recursive error in rate.c XXXXX input “tree”

Hello everyone, I have a question. I want to try an analysis using StarBeast, for which I have some

Hi Jie, My email address is pfei...@sdsc.edu . Best regards, Wayne On Sep 25, 2025, at 4:17 PM, Jie

Hello! I have been trying to merge node annotation data from a continuous phylogeography and a

Hi, About the two parameters of “ Prevalence ” and “ Incidence ” estimated by the Birth Death-SIR