Visualising trajectories

[Bruce Niessner]

Hey there,

So, I ran the tutorial example of thrombin, and then wanted to visualize the trajectories.

When calling the command

vtf_trajectory -traj trajectory.xml > trajectory.vtf

as suggested in the tutorial, I get the following error

vtf_trajectory: unknown option '-traj'.
Outputs trajectory in VTF format for viewing with VMD. Receives, through standard input, the output of process_trajectories.
  -pqr output trajectory of PQR files
  -help  Display this list of options
  --help  Display this list of options

Might this be a bug?

It also creates a file, which is empty.

best

Jakob

[Gary Huber]

Hi, Jakob,

Yes, I recently got rid of the -traj option and now the trajectory.xml file comes in through standard input:

vtf_trajectory < trajectory.xml > trajectory.vtf

I'll check the documentation to make sure that it is consistent.

Gary

--
You received this message because you are subscribed to the Google Groups "browndye-users-l" group.
To unsubscribe from this group and stop receiving emails from it, send an email to browndye-users...@ucsd.edu.