I think in an earlier email, we noted that reasons for the results are difficult to provide when we do not have the context of where the time series is located.
Nevertheless, please review the wrfinput file to be sure these constituents look appropriate. Also review the wrfchemi files for the same reason. O3 often goes to near zero when NOx is very high. So, it is good to check NO and NO2 concentrations.
Below I provide the &chem section of my chem_opt=202 namelist that ran with v4.0.3. I am running only 1 domain, so just look at the first column of namelist values.
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Mary Barth
Senior Scientist
NSF - National Center for Atmospheric Research
P.O. Box 3000
Boulder, CO 80307
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&chem
chem_opt = 202, 202, 112,
chem_in_opt = 0, 1, 1,
io_style_emissions = 1,
chemdt = 1, 1, 0.5,
bioemdt = 10, 2, 2,
kemit = 10,
photdt = 30, 30, 30,
phot_opt = 4, 4, 4,
emiss_opt = 10, 8, 8,
gas_drydep_opt = 1, 1, 1,
aer_drydep_opt = 1, 1, 1,
bio_emiss_opt = 3, 3, 3,
ne_area = 500,
emiss_inpt_opt = 102, 111, 111,
biomass_burn_opt = 2, 2, 2,
plumerisefire_frq = 30, 60, 60,
dust_opt = 13,
seas_opt = 3,
dmsemis_opt = 0,
aer_op_opt = 1,
opt_pars_out = 1,
gas_bc_opt = 1, 1, 1,
gas_ic_opt = 1, 1, 1,
aer_bc_opt = 1, 1, 1,
aer_ic_opt = 1, 1, 1,
gaschem_onoff = 1, 1, 1,
aerchem_onoff = 1, 1, 1,
wetscav_onoff = 1, 1, 1,
cldchem_onoff = 1, 0, 0,
vertmix_onoff = 1, 1, 1,
chem_conv_tr = 1, 0, 0,
conv_tr_wetscav = 1, 0, 1,
conv_tr_aqchem = 1, 0, 1,
have_bcs_chem = .true., .true., .true.,
have_bcs_tracer = .true., .true.
have_bcs_upper = .false., .false., .false.,
aer_ra_feedback = 1, 1, 1,
chemdiag = 1,
scale_fire_emiss = .true.,
is_full_tuv = .true.,
has_o3_exo_coldens = .true.,
pht_cldfrc_opt = 2,
cld_od_opt = 2,
n2o5_hetchem = 0