Dear Setareh,
Unfortunately I set up anthro_emis to work with TOTAL emissions only and never specified before the emissions from specific sectors.
To set emissions from a specific sector you can check anthro_emiss readme file (it is called README.anthro_emis and located in anthro_emiss working diretory) and in particular look for the description of a parameter "sub_categories". In your emis.inp file this parameter is set to "TOTAL".
"In case I want to use an Anaul grid map data, should I use my script as I used before?" - if by "script" you mean "emis.inp" file which you sent, then the answer is "yes".
Annual gridmaps present total emissions for a particular chemical species (TOTAL). As I understand this is a sum of sector specific emissions.
Respectfully,
Georgy.