Daniel Stieglitz
Jun 13, 2013, 7:39:20 PM6/13/13
to sta...@clarkparsia.com
(I sent this to sta...@clarkparsia.com, but it didn't seem to go through, so re-posting here)
Are there any other steps required to set up a Stardog embedded database in a Grails application? I've build stardog-spring and stardog-groovy from source, imported all the recommended jars (recommended in a previous thread) into the lib directory and put these two lines in BootStrap.groovy:
The following is on Grails 2.2.1 with Stardog 1.2.3
def stardog = new Stardog([embedded: true, createIfNotPresent: true, home: "/vol/stardog", to: "testgroovy", username: "admin", password: "admin"])
stardog.query("select ?x ?y ?z WHERE { ?x ?y ?z } LIMIT 2", { println it })
This is the (last) error when starting the server:
30) Error injecting constructor, java.lang.NullPointerException
at com.clarkparsia.stardog.security.index.IndexBackedUserPersistenceManager.<init>(IndexBackedUserPersistenceManager.java:59)
while locating com.clarkparsia.stardog.security.index.IndexBackedUserPersistenceManager
at com.clarkparsia.stardog.security.index.SecurityModule.configure(SecurityModule.java:61)
while locating com.clarkparsia.stardog.security.UserPersistenceManager<org.openrdf.model.URI>
for parameter 0 at com.clarkparsia.stardog.security.impl.ConsistentSystemSecurityManager.<init>(ConsistentSystemSecurityManager.java:55)
while locating com.clarkparsia.stardog.security.impl.ConsistentSystemSecurityManager
at com.clarkparsia.stardog.security.index.SecurityModule.configure(SecurityModule.java:69)
while locating com.clarkparsia.stardog.security.SystemSecurityManager<org.openrdf.model.URI>
for parameter 14 at com.clarkparsia.stardog.StardogKernel.<init>(StardogKernel.java:174)
at com.clarkparsia.stardog.StardogKernel.class(StardogKernel.java:174)
while locating com.clarkparsia.stardog.StardogKernel
Caused by: java.lang.NullPointerException
at com.google.common.base.Preconditions.checkNotNull(Preconditions.java:191)
at com.clarkparsia.stardog.security.index.SecurityResourceFactoryImpl.createGenericSecurityResource(SecurityResourceFactoryImpl.java:69)
at com.clarkparsia.stardog.security.index.ExistingSecurityResourcesLoaderImpl.genericSecurityResourcesMap(ExistingSecurityResourcesLoaderImpl.java:266)
at com.clarkparsia.stardog.security.index.ExistingSecurityResourcesLoaderImpl.load(ExistingSecurityResourcesLoaderImpl.java:88)
at com.clarkparsia.stardog.security.index.ExistingSecurityResourcesLoaderImpl.existingUsers(ExistingSecurityResourcesLoaderImpl.java:112)
at com.clarkparsia.stardog.security.index.IndexBackedUserPersistenceManager.loadResources(IndexBackedUserPersistenceManager.java:246)
at com.clarkparsia.stardog.security.index.AbstractIndexBackedPersistenceManager.<init>(AbstractIndexBackedPersistenceManager.java:72)
at com.clarkparsia.stardog.security.index.AbstractIndexBackedNamedResourcePersistenceManager.<init>(AbstractIndexBackedNamedResourcePersistenceManager.java:29)
at com.clarkparsia.stardog.security.index.IndexBackedUserPersistenceManager.<init>(IndexBackedUserPersistenceManager.java:64)
at com.clarkparsia.stardog.security.index.IndexBackedUserPersistenceManager.<init>(IndexBackedUserPersistenceManager.java:59)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.springsource.loaded.ri.ReflectiveInterceptor.jlrConstructorNewInstance(ReflectiveInterceptor.java:975)
at com.google.inject.internal.DefaultConstructionProxyFactory$2.newInstance(DefaultConstructionProxyFactory.java:85)
at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:254)
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:54)
at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1031)
at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.Scopes$1$1.get(Scopes.java:65)
at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:40)
at com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:84)
at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:254)
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:54)
at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1031)
at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.Scopes$1$1.get(Scopes.java:65)
at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:40)
at com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:84)
at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:254)
at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1031)
at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.Scopes$1$1.get(Scopes.java:65)
at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:40)
at com.google.inject.internal.InjectorImpl$4$1.call(InjectorImpl.java:978)
at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1024)
at com.google.inject.internal.InjectorImpl$4.get(InjectorImpl.java:974)
at com.clarkparsia.stardog.snarl.server.AbstractServer.start(AbstractServer.java:103)
at com.clarkparsia.stardog.StardogDBMS.startEmbeddedServer(StardogDBMS.java:146)
at com.clarkparsia.stardog.StardogDBMS$startEmbeddedServer.call(Unknown Source)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:45)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:112)
at com.clarkparsia.stardog.ext.groovy.Stardog.initialize(Stardog.groovy:119)
at com.clarkparsia.stardog.ext.groovy.Stardog.<init>(Stardog.groovy:104)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.springsource.loaded.ri.ReflectiveInterceptor.jlrConstructorNewInstance(ReflectiveInterceptor.java:975)
at org.codehaus.groovy.reflection.CachedConstructor.invoke(CachedConstructor.java:77)
at org.codehaus.groovy.runtime.callsite.ConstructorSite$ConstructorSiteNoUnwrapNoCoerce.callConstructor(ConstructorSite.java:102)
at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallConstructor(CallSiteArray.java:57)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:182)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:190)
at BootStrap$_closure1.doCall(BootStrap.groovy:7)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springsource.loaded.ri.ReflectiveInterceptor.jlrMethodInvoke(ReflectiveInterceptor.java:1243)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:233)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1082)
at groovy.lang.ExpandoMetaClass.invokeMethod(ExpandoMetaClass.java:1106)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:906)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:956)
at groovy.lang.ExpandoMetaClass.invokeMethod(ExpandoMetaClass.java:1106)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:906)
at groovy.lang.Closure.call(Closure.java:412)
at groovy.lang.Closure.call(Closure.java:406)
at grails.util.Environment.evaluateEnvironmentSpecificBlock(Environment.java:308)
at grails.util.Environment.executeForEnvironment(Environment.java:301)
at grails.util.Environment.executeForCurrentEnvironment(Environment.java:277)
at org.codehaus.groovy.grails.commons.DefaultGrailsBootstrapClass.callInit(DefaultGrailsBootstrapClass.java:60)
at org.codehaus.groovy.grails.web.context.GrailsConfigUtils.executeGrailsBootstraps(GrailsConfigUtils.java:74)
at org.codehaus.groovy.grails.web.context.GrailsContextLoader.initWebApplicationContext(GrailsContextLoader.java:108)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:111)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4791)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5285)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:680)
30 errors
Line | Method
->> 987 | get in com.google.inject.internal.InjectorImpl$4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
| 103 | start in com.clarkparsia.stardog.snarl.server.AbstractServer
| 146 | startEmbeddedServer . . . . . . in com.clarkparsia.stardog.StardogDBMS
| 119 | initialize in com.clarkparsia.stardog.ext.groovy.Stardog
| 104 | <init> . . . . . . . . . . . . . in ''
| 7 | doCall in BootStrap$_closure1
| 308 | evaluateEnvironmentSpecificBlock in grails.util.Environment
| 301 | executeForEnvironment in ''
| 277 | executeForCurrentEnvironment . . in ''
| 303 | innerRun in java.util.concurrent.FutureTask$Sync
| 138 | run . . . . . . . . . . . . . . in java.util.concurrent.FutureTask
| 895 | runTask in java.util.concurrent.ThreadPoolExecutor$Worker
| 918 | run . . . . . . . . . . . . . . in ''
^ 680 | run in java.lang.Thread
Al Baker
Jun 13, 2013, 11:28:18 PM6/13/13
to sta...@clarkparsia.com
I can reproduce the error w/ an
embedded configuration, and will work on a fix shortly.
For the interim, you should be able to use client/server configuration, e.g.:
def stardog = new Stardog(url:"snarl://localhost:5820/", to:"testgroovy", username:"admin", password:"admin")
This will require you to startup the server:
./stardog-admin db create -n testgroovy
./stardog-admin server start
Regards,
Al
For the interim, you should be able to use client/server configuration, e.g.:
def stardog = new Stardog(url:"snarl://localhost:5820/", to:"testgroovy", username:"admin", password:"admin")
This will require you to startup the server:
./stardog-admin db create -n testgroovy
./stardog-admin server start
Regards,
Al
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