New bigWig logo/dynseq display; hic settings; more doc for bigMaf & searchTrix

[Brian Lee]

There is a new setting "logo on" for bigWigs that allow displaying sequence at the base level: http://genome.ucsc.edu/goldenPath/help/trackDb/trackDbHub.html#logo

See an example on the bigWig help page, showing this option: http://genome.ucsc.edu/goldenPath/help/bigWig.html#Ex4

Many thanks to the Kundaje Lab for the development of the dynseq code behing the new "logo on" display. 

Hic tracks also have gained new recent settings:

hicDistanceMin:  for Hi-C tracks a setting that controls the minimum interaction distance in nucleotides for the heatmap. If

http://genome.ucsc.edu/goldenPath/help/trackDb/trackDbHub.html#hicDistanceMin

hicDistanceMax: for Hi-C tracks a setting that controls the maximum interaction distance in nucleotides for the heatmap.

http://genome.ucsc.edu/goldenPath/help/trackDb/trackDbHub.html#hicDistanceMax

Also, links to more help documentation have been added.  The bigMaf section, https://genome.ucsc.edu/goldenPath/help/trackDb/trackDbHub.html#bigMaf_-_Multiple_Alignments, now features links to more information about the frames and summary .as files: https://genome.ucsc.edu/goldenPath/help/bigMaf.html#frames_summary

Likewise, the searchTrix setting, https://genome.ucsc.edu/goldenPath/help/trackDb/trackDbHub.html#searchTrix , now has a link to a Searchable Track Hub Quick Start Guide: https://genome.ucsc.edu/goldenPath/help/hubQuickStartSearch.html