New interact and bigInteract track type in v367

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Brian Lee

Jun 27, 2018, 7:23:54 PM6/27/18

Track Hubs can now support a new bigInteract type that can display pairwise interactions:

Here is an example stanza of a track hub using the new format:

track exampleInteractTrack
type bigInteract
visibility full
shortLabel exInteract
longLabel Example interact track
spectrum on
scoreMin 175
maxHeightPixels 300:150:20

The format can also use a new interactDirectional setting to display dashed lines when the target region precedes the source region:

The new interact help page gives details on how the build simple text-based custom track versions of this pairwise interaction displays and the steps of building the binary indexed version of type bigInteract used in Track Hubs:

This new type has yet to be announced beyond the Track Hub mailing list. 
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