tool, hgGenome( https://genome.ucsc.edu/cgi-bin/hgGenome), which can show you the density of objects present across the genome. Here is a link that will show you the example of

bin/hgGenome?hgS_doOtherUser=submit&hgS_otherUserName=brianlee&hgS_otherUserSessionName=sacCer3_spots Note that you can click this graph image (for example

bin/hgGenome?hgsid=47156481 > 7_6TfIYA3lM3bK8DUkAaABL0Aff6OK&clade=mammal&org=Rat&db=rn4&h > gGenome_threshold_rn5=3.5&hgGenome_graph_rn5_1_1

bin/hgGenome) that displays data on multiple chromosomes at once, but it is also designed to show values that change over the span of each chromosome. Genome Graphs would not be the

bin/hgGenome) that displays data on multiple chromosomes at once, but it is also designed to show values that change over the span of each chromosome. Genome Graphs would not be the

Dear person in charge, I am writing because your Genome browser didn't display my data after

bin/hgGenome) that should do what you're trying to accomplish. Please see the User's Guide at http://genome.ucsc.edu/goldenPath/help/hgGenomeHelp.html to help you

Hello, We are trying to install Genome Browser on our local server (say 12.34.56.78) to evaluate it

Hi, I have created a track hub and I am able to view the data as bar graph. I would wish to view my

I have a custom track with about 90000 elements of 10-bps long (known as CArG elements) in a bed

bin/hgGenome > (You can also get to it by hitting the "Home" link and then "Genome > Graphs" on the left-hand menu.) > > To create a density graph for

Dear All, Could you guide me how I can map certain Positions in an exon to the Protein positions?

bin/hgGenome > will only draw lines between your specified points. > > See also: > > http://genomewiki.ucsc.edu/index.php/Selecting_a_graphing_track_data_format

Help, I'm still having the same problem; no matter how I delete data (for example, from "

of driving hgGenome via URL: http://hg/cgi-bin/hgGenome?db=hg18&hgGenome_dataSetName=hmYRI_CEU_tdt_TDTgg&hgGenome_dataSetDescription=GalaxyGG_data&hgGenome_formatType

bin/hgGenome http://genome.ucsc.edu/goldenPath/help/hgGenomeHelp.html -Galt ----- Original Message ----- From: "Louis Letourneau" To: genome@soe.ucsc.edu

bin/hgGenome It displays all chromosomes in a single view. You can upload your data using a very simple format -- click on the upload button for more info. Hope that helps, Angie On Mon

bin/hgGenome If not, please write back with more details about what you're trying to do. Kayla Smith UCSC Genome Bioinformatics Group ----- "Kai Tan" wrote: > Hi

Help please! I've been using GG from Galaxy for about 2 years but today, when I went to make some

Hi All, We are planning to have local installation of UCSC Browser. We need few clarification on the

Hi All, I understand using UCSC Browser we can view only one chromosome related data at a time, is it

Hi UCSC folks, I want to map a number of features to ideograms for VERY basic visualization purposes.

Hi, Is there a possibility of designing custom tracks for uploading using not genomic positions, but

Genome Graphs is a great way to see multiple custom tracks. I'm using it on an internal private

bin/hgGenome Which only graphs lines between your data points, it is not a bar graph. Plus you can see all of your data on the genome in a single graph. --Hiram Ginger Cheng wrote: >

bin/hgGenome?clade=mammal&org=Human&db=hg18&hgGenome_dataSetName=dname&hgGenome_dataSetDescription=blahblah&hgGenome_formatType=best

bin/hgGenome?hgGenome_doPsOutput=1&hgsid=301123643&clade=mammal&org=Human&db=hg19&hgGenome_threshold_hg19=3.5&hgGenome_graph_hg19_1_1