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Erin Baldwin
Oct 19, 2005, 12:34:36 PM10/19/05
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I am trying to determine the percentage of repeat sequences (for example, segmental duplications) within a defined region of a chromosome. I have tried a variety of searches using the table brower with intersecting tables with no success. Any suggestions?
Thanks, Erin
Thanks, Erin
Donna Karolchik
Oct 19, 2005, 1:17:56 PM10/19/05
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hi Erin,
It sounds like you may be able to use the summary/statistics functionality
in the Table Browser.. Set up your query with the table & region of
interest, apply whatever filtering is needed, then click the
summary/statistics button.
-Donna
-----------------------------------
Donna Karolchik
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
> _______________________________________________
> Genome maillist - Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>
It sounds like you may be able to use the summary/statistics functionality
in the Table Browser.. Set up your query with the table & region of
interest, apply whatever filtering is needed, then click the
summary/statistics button.
-Donna
-----------------------------------
Donna Karolchik
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
> Genome maillist - Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>
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