Hi Bo,
Thank you for your question about querying the Table Browser. Unfortunately 1 million
identifiers is too many ID's to query the Table Browser with. We suggest halving the number
of ID's per query until you find an acceptable number, as we do not set any hard limits on
the number of ID's since it may vary wildly between different tables.
As an alternative to this binary search method, you can try downloading the table dump for the
snp146 Common table:
http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/snp146Common.txt.gz
and using the following command:
zgrep -Fwf fileOfRsIDs.txt snp146Common.txt.gz
to extract all the lines from the table containing your identifier.
Thank you again for your inquiry and using the UCSC Genome Browser. If you have any
further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address
are archived on a publicly-accessible forum. If your question includes sensitive data, you
may send it instead to genom...@soe.ucsc.edu.
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