Missing cllinVar

[Minou Bina]

Hello,

A few hours ago I sent a note about ClinVar.  I have attached a file indicating what is missing

Best,

Minou Bina

[Luis Nassar]

Hello Minou,

Thank you for the screenshot, that was helpful in tracking down what happened.

The variants you marked in CHD7 exon 1 (chr8:61,591,162-61,591,761 on hg19) are missing from our track because ClinVar themselves deleted them upstream in their March 2026 release. All 10 of these variants in that cluster were submitted by a single submitter, who has since withdrawn their submissions, so ClinVar removed the variant accessions. You can see this directly on NCBI's ClinVar pages, each shows a "Deleted" banner that reads "The accession VCV000XXXXXX.5 was deleted because the only supporting submission was deleted.":

• "del": https://www.ncbi.nlm.nih.gov/clinvar/variation/363422/ (c.-466_-461del)
• "insGGCAGC": https://www.ncbi.nlm.nih.gov/clinvar/variation/363424/ (c.-467_-466insGGCAGC)
• "delinsGGCGGCAGCG": https://www.ncbi.nlm.nih.gov/clinvar/variation/363425/
• "GCG": https://www.ncbi.nlm.nih.gov/clinvar/variation/363432/ (c.-465GCG⁸)

The other deleted accessions in that cluster are VCV000363426, 363427, 363428, 363429, 363430, and 363431 — all variations on the c.-466delinsGGCGGC... motif, all deleted for the same reason.

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Lou Nassar
UCSC Genomics Institute