Liftover mm10 to CBAJ mouse

[Manoj Hariharan]

Hello,

I am working on a project using CBA mouse [CBA_J_v1 Apr. 2016 house mouse (CBA_J v1 2016) (GCA_001624475.1)]

But I need the blacklist file for this genome. Since there are not many genome-wide biochemical assays performed, I was hoping to do a liftOver of the mm10 genome to the CBA_J genome. 

Hoever, I am not able to find this genome in the LiftOver pull down options. Could you please help with this.

Thanks

Manoj.

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Manoj Hariharan, Ph.D.

Senior Staff Scientist

Genomic Analysis Laboratory

Salk Institute for Biological Studies, La Jolla, CA

[Luis Nassar]

Hi, Manoj.

We started computing the liftOver file for you. It typically takes a few days, so we'll email you next week when it's done.

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Lou Nassar
UCSC Genomics Institute

[Manoj Hariharan]

Hi Luis,

Thanks so much. Looking forward to it!

Regards,

Manoj.

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Manoj Hariharan, Ph.D.

Senior Staff Scientist

Genomic Analysis Laboratory

Salk Institute for Biological Studies, La Jolla, CA