hg38.phyloP447wayLRT.bw and hg38.phyloP447wayPrimates.bw are exactly the same?

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Meng, Fan

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Oct 2, 2025, 12:12:10 PMOct 2
to gen...@soe.ucsc.edu
Dear UCSC representative:

I just noticed that genomic region conservation scores derived from hg38.phyloP447wayLRT.bw  and hg38.phyloP447wayPrimates.bw are exactly the same.
I  downloaded the original files at https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phyloP447way/  again and they have exact same size at the byte level :

 8946196321 Oct  4  2023 hg38.phyloP447wayLRT.bw
 8946196321 Oct  4  2023 hg38.phyloP447wayPrimates.bw

Could you possibly check if both of the links are correct? Thank you very much for your help.

Best,

Fan

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Gerardo Perez

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Oct 9, 2025, 9:08:54 PMOct 9
to Meng, Fan, gen...@soe.ucsc.edu

Hello, Fan.

Thank you for reaching out and bringing this to our attention.

We checked the files and found that the hg38.phyloP447wayPrimates.bw link was indeed pointing to the wrong file. This has now been corrected, and the link should direct you to the appropriate file: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phyloP447way/

We appreciate you taking the time to let us know about this issue. If you have any further questions, please reply to gen...@soe.ucsc.edu. All messages sent to that address are archived on a publicly-accessible Google Groups forum. If your question includes sensitive data, you may send it instead to genom...@soe.ucsc.edu.

Gerardo Perez
UCSC Genomics Institute


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