hg 18 vs hg 19

[Vikram Katju]

in the table browser, with clade = Mammal, genome = human, assembly =
hg19, group = gene and gene prediction tracks, i get the option of
pfam in the track option. But i don't get the pfam option when
selecting assembly = hg18. Is there some equivalent database which can
be used for annotating proteogenomic information for human hg18 WGS
data? I am specifically interested in annotating whether exonic
mutations in the WGS data i am analyzing are within domain regions of
the corresponding proteins.

[Luvina Guruvadoo]

Hi Vikram,

Thank you for contacting us. You are correct; the Pfam track is not
available on hg18. However, one of our engineers is looking into it and
may be able to generate this track for you. We'll let you know in a day
or so.

If you have further questions or comments, please reply to
gen...@soe.ucsc.edu.

Regards,
---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group

[Luvina Guruvadoo]

Hi Vikram,

The Pfam for UCSC Genes track is now available on hg18. If you have
further questions, feel free to contact us again at gen...@soe.ucsc.edu.

Regards,
---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group