Request for chain files of different tree shrew genome version

[Lin Ou]

Dear UCSC staff,

I hope this email finds you well.

Earlier I used the most recent genome version of tree shrew (GCA_033439345.1) to analyze my data. But nowadays many available resources are based on the old genome version (tupBel1, TupChi_1.0), like the alignment results. For convenience, we want to utilize some of these ready resources directly. However, the chain files for these two genomes conversion are not available. Would it be possible for your team to provide the chain files(GCA_033439345.1 to tupBel1, tupBel1 to GCA_033439345.1, GCA_033439345.1 to TupChi_1.0, TupChi_1.0 to GCA_033439345.1)? It will be really helpful for us and other researchers.

Genome assembly KIZ version 2(GCA_033439345.1): https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_033439345.1/

TupChi_1.0: https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000334495.1/

tupBel1:https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000181375.1/

Thank you for your help. Looking forward to your reply.

Best regards,

 

Lin Ou

 

[Luis Nassar]

Hello, Lin.

We'll get those started. They should be ready by the end of the week or early next week. We'll follow up with you.

--

---
You received this message because you are subscribed to the Google Groups "UCSC Genome Browser Public Support" group.
To unsubscribe from this group and stop receiving emails from it, send an email to genome+un...@soe.ucsc.edu.
To view this discussion visit https://groups.google.com/a/soe.ucsc.edu/d/msgid/genome/ebbac9db-3958-4a97-bf6e-4692f011257bn%40soe.ucsc.edu.

--

I hope this is helpful. Please include gen...@soe.ucsc.edu in any replies to ensure visibility by the team. All messages sent to that address are archived on our public forum. If your question includes sensitive information, you may send it instead to genom...@soe.ucsc.edu.

Lou Nassar
UCSC Genomics Institute