Request for liftOver Chain for Chelonioidea (Sea Turtles)

[OFUJI Kokoro]

Dear UCSC Genome Browser Team,

 

My name is Kokoro Ofuji. I am a graduate student at Kyushu University in Japan and conducting research on the molecular evolution of sea turtles. Thank you for providing us with very useful databases.

 

For my research project, I would like to determine whether the SNPs in Chelonia mydas (Green sea turtle) are ancestral or alternative. Could you please create a chain file for other species?

・Chelonia mydas (GCA_015237465.2) -> Natator depressus(GCA_965152275.1).

・Chelonia mydas (GCA_015237465.2) ->Dermochelys coriacea(GCA_009764565.4).

・Chelonia mydas (GCA_015237465.2) -> Caretta caretta (GCF_965140235.1).

Thank you for your time and I look forward to hearing from you.

 

Best regards,

Ofuji Kokoro

 

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OFUJI Kokoro 

 

Departure of Biology, Faculty of Science, Kyushu University

 

Email ofuji.ko...@s.kyushu-u.ac.jp

[Luis Nassar]

Hello, Ofuji.

We just wanted to send you an update that these chain files are being generated; they should be done in a few days.

Lou Nassar

UCSC Genome Browser.

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[Luis Nassar]

Hi, Ofuji.

The requested liftOver files can now be found here: https://hgdownload.soe.ucsc.edu/hubs/GCA/015/237/465/GCA_015237465.2/liftOver/

Lou Nassar
UCSC Genome Browser