[Genome] install Genome Browser locally

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Yan Xiang - QIAGEN

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Mar 5, 2012, 5:36:47 PM3/5/12
to gen...@soe.ucsc.edu
Hello,

We are trying to install Genome Browser on our local server (say 12.34.56.78) to evaluate it before purchasing the license.

We installed it at /usr/local/ and the cgi-bin files are in /usr/local/cgi-bin. The files/directories in cgi-bin:

[user@Mars cgi-bin]$ ls
all.joiner hgApi hgCustom hgGateway hgLiftOver hgSession hgVisiGene pbTracks
cartDump hgBlat hgEncodeDataVersions hgGene hgNear hgSuggest loader phyloGif
cartReset hgc hgEncodeVocab hgGeneData hgNearData hgTables mkEncodeFrameset printEnv.pl
das hgCgiData hgFileSearch hgGenome hgPal hgTracks pbGateway
greatData hgConvert hgFileUi hgHubConnect hgPcr hgTrackUi pbGlobal
We then tried to access it though the URL below but got "the website cannot display the page".

http://12.34.56.78/cgi-bin/hgTracks<http://10.2.1.96/cgi-bin/hgTracks>

http://12.34.56.78/cgi-bin/hgGateway



The error in apache server's error log:
[Fri Mar 02 16:10:50 2012] [error] Couldn't open ./hg.conf , No such file or directory
[Fri Mar 02 16:10:50 2012] [error] Premature end of script headers: hgTracks
[Fri Mar 02 16:11:27 2012] [error] Couldn't open ./hg.conf , No such file or directory
[Fri Mar 02 16:11:27 2012] [error] Premature end of script headers: hgGateway

We are frustrated about it. Could you please look into our case and give us any instructions?


Regards,
Yan

Hiram Clawson

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Mar 5, 2012, 7:30:24 PM3/5/12
to Yan Xiang - QIAGEN, gen...@soe.ucsc.edu
Please note the error says you have no hg.conf file. This is a file you
must place into your cgi-bin/ directory. A template for the file
is in the source tree src/product/ex.hg.conf
You need to edit the template to create the cgi-bin/hg.conf file.

Please follow the instructions in the README files in the
src/product/ directory in the source tree which explain the
install procedures.

--Hiram
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